Job Description P29366 Confidence 99.97% Date Mon Jul 2 19:15:38 BST 2012 Rank 2 Aligned Residues 248 % Identity 19% Template c2dybA_ PDB info PDB header:oxidoreductase Chain: A: PDB Molecule:neutrophil cytosol factor 4; PDBTitle: the crystal structure of human p40(phox) Resolution 3.15 Å

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		278	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.				.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.
Predicted Secondary structure																					.	.	.
Query SS confidence																					.	.	.
Query Sequence		V	D	G	E	L	L	V	K	A	S	V	E	S	F	G	L	E	D	E	.	.	.	K	Y	W	F	L	V	C	C	E	L	S	N	G	K	T	R	Q	L	K	R	Y	Y	Q	D	F	Y	D	L	Q	V	Q	L	L	D	A	F	P	A	E	A	G	K	L	R	D	A	G	G	Q	W	S	K	R	I	M	P	Y	I
Query Conservation																					.	.	.
Alig confidence																					.	.	.																																							.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation																																																														.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence		L	P	D	D	V	A	I	S	A	N	I	A	D	I	E	E	K	R	G	F	T	S	H	F	V	F	V	I	E	V	K	T	K	G	G	S	K	Y	L	I	Y	R	R	Y	R	Q	F	H	A	L	Q	S	K	L	E	E	R	F	G	T	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	L	P	T	L
Template Known Secondary structure		S		T	T	S														S	S	S												T	T	S																							T			.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Predicted Secondary structure																																																														.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
		16	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.																	.	.	.	.
		355	.	.	.	.	360		.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.	.	.	.	.	.	.	400	.	.	.	.	.	.	.	.	.	410	.	.	.	.	.	.	.	.	.	420	.	.	.	.	.	.	.	.	.	430	.	.	.
Predicted Secondary structure								.
Query SS confidence								.
Query Sequence		P	G	P	V	P	Y	.	V	T	N	S	I	T	K	K	R	K	E	D	L	N	I	Y	V	A	D	L	V	N	L	P	D	Y	I	S	R	S	E	M	V	H	S	L	F	V	V	L	N	N	G	F	D	R	E	F	E	R	D	E	N	Q	N	N	I	K	T	L	Q	E	N	D	T	A	T	F	A	T	A	S	Q
Query Conservation								.
Alig confidence								.																																																											.	.	.	.	.
Template Conservation																																																																			.	.	.	.	.
Template Sequence		P	A	K	V	Y	V	G	V	K	Q	E	I	A	E	M	R	I	P	A	L	N	A	Y	M	K	S	L	L	S	L	P	V	W	V	L	M	D	E	D	V	R	I	F	F	Y	Q	S	P	Y	D	S	E	Q	V	P	Q	A	L	R	R	L	R	P	R	R	.	.	.	.	.	M	A	A	P	R	A	E	A	L	F
Template Known Secondary structure								S																							S						T									S																	S				.	.	.	.	.									S	S
Template Predicted Secondary structure																																																																			.	.	.	.	.
Template SS confidence
		90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.						.	.	.	.	.	160	.	.	.	.
		434	.	.	.	.	.	440	.	.	.	.	.	.	.	.	.	450	.	.	.	.	.	.	.	.	.	460	.	.	.	.	.	.	.	.	.	470	.	.	.	.	.	.	.	.	.	480	.	.	.	.																		.	.	.	.	.	490	.	.	.	.	.	.
Predicted Secondary structure																																																					.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence																																																					.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence		T	S	N	F	A	S	T	N	Q	D	N	T	L	T	G	E	D	L	K	L	N	K	K	L	S	D	L	S	L	S	G	S	K	Q	A	P	A	Q	S	T	S	G	L	K	T	T	K	I	K	F	Y	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	Y	K	D	D	I	F	A	L	M	L	K	G
Query Conservation																																																					.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence																																																					.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation
Template Sequence		D	F	T	G	N	S	K	L	E	L	N	F	K	A	G	D	V	I	F	L	L	S	R	I	N	K	D	W	L	E	G	T	V	R	G	A	T	G	I	F	P	L	S	F	V	K	I	L	K	D	F	P	E	E	D	D	P	T	N	W	L	R	C	Y	Y	Y	E	D	T	I	S	T	I	K	D	I	A	V	E	E
Template Known Secondary structure			B			S	S	S	S	B			B		T	T										S	S	S							T	T							G	G	G										T	T													S	S											S
Template Predicted Secondary structure
Template SS confidence
		180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.
		497					.	.	500	.	.	.	.	.	.	.	.	.	510	.	.	.	.	.	.	.	.	.	520	.	.	.	.	.	.	.	.	.	530	.	.	.	.	.	.	.	.	.	540	.	.	.	.	.	.
Predicted Secondary structure			.	.	.	.
Query SS confidence			.	.	.	.
Query Sequence		D	.	.	.	.	T	T	Y	K	E	L	R	S	K	I	A	P	R	I	D	T	D	N	F	K	L	Q	T	K	L	F	D	G	S	G	E	E	I	K	T	D	S	Q	V	S	N	I	I	Q	A	K	L	K	I
Query Conservation			.	.	.	.
Alig confidence			.	.	.	.
Template Conservation
Template Sequence		D	L	S	S	T	P	L	L	K	D	L	L	E	L	T	R	R	E	F	Q	R	E	D	I	A	L	N	Y	R	D	A	E	G	D	L	V	R	L	L	S	D	E	D	V	A	L	M	V	R	Q	A	R	G	L
Template Known Secondary structure			T	T																	T		S									S	S	S							S												T	T	S
Template Predicted Secondary structure
Template SS confidence
		260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.

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Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions