Email l.a.kelley@imperial.ac.uk Description D6VPM8 Date Mon Jul 2 19:10:02 BST 2012 Unique Job ID dcb9f5d08c9cc38c

Detailed template information

# Template Alignment Coverage 3D Model Confidence % i.d. Template Information

1 d2cqra1 46.3 23 Fold:DNA/RNA-binding 3-helical bundle Superfamily:Homeodomain-like Family:Myb/SANT domain 2 d2cqqa1 33.7 15 Fold:DNA/RNA-binding 3-helical bundle Superfamily:Homeodomain-like Family:Myb/SANT domain 3 c2d9aA_ 27.0 15 PDB header:transcription Chain: A: PDB Molecule:myb-related protein b; PDBTitle: solution structure of rsgi ruh-050, a myb dna-binding2 domain in mouse cdna 4 c2dinA_ 25.9 21 PDB header:dna binding protein Chain: A: PDB Molecule:cell division cycle 5-like protein; PDBTitle: solution structure of the myb_dna-binding domain of human2 cell division cycle 5-like protein 5 d1wgxa_ 25.9 11 Fold:DNA/RNA-binding 3-helical bundle Superfamily:Homeodomain-like Family:Myb/SANT domain 6 c2yusA_ 25.3 19 PDB header:transcription Chain: A: PDB Molecule:swi/snf-related matrix-associated actin- PDBTitle: solution structure of the sant domain of human swi/snf-2 related matrix-associated actin-dependent regulator of3 chromatin subfamily c member 1 7 c3fovA_ 22.1 13 PDB header:structural genomics, unknown function Chain: A: PDB Molecule:upf0102 protein rpa0323; PDBTitle: crystal structure of protein rpa0323 of unknown function from2 rhodopseudomonas palustris 8 c4eefI_ 20.4 8 PDB header:immune system/inhibitor Chain: I: PDB Molecule:f-hb80.4, designed hemagglutinin binding protein; PDBTitle: crystal structure of the designed inhibitor protein f-hb80.4 in2 complex with the 1918 influenza virus hemagglutinin. 9 d1un2a_ 19.6 17 Fold:Thioredoxin fold Superfamily:Thioredoxin-like Family:DsbA-like 10 c3l9vE_ 16.7 12 PDB header:oxidoreductase Chain: E: PDB Molecule:putative thiol-disulfide isomerase or thioredoxin; PDBTitle: crystal structure of salmonella enterica serovar typhimurium srga 11 d2f76x1 15.6 20 Fold:Retroviral matrix proteins Superfamily:Retroviral matrix proteins Family:Mason-Pfizer monkey virus matrix protein 12 c2ebiA_ 15.6 21 PDB header:dna binding protein Chain: A: PDB Molecule:dna binding protein gt-1; PDBTitle: arabidopsis gt-1 dna-binding domain with t133d phosphomimetic mutation 13 c3c7mB_ 15.4 10 PDB header:oxidoreductase Chain: B: PDB Molecule:thiol:disulfide interchange protein dsba-like; PDBTitle: crystal structure of reduced dsbl 14 c2kdtA_ 14.7 11 PDB header:protein transport Chain: A: PDB Molecule:neuroendocrine convertase 1; PDBTitle: pc1/3 dcsg sorting domain structure in dpc 15 d1q5za_ 14.6 54 Fold:Invasion protein A (SipA) , C-terminal actin binding domain Superfamily:Invasion protein A (SipA) , C-terminal actin binding domain Family:Invasion protein A (SipA) , C-terminal actin binding domain 16 c1q5zA_ 14.6 54 PDB header:cell invasion Chain: A: PDB Molecule:sipa; PDBTitle: crystal structure of the c-terminal actin binding domain of2 salmonella invasion protein a (sipa) 17 d1kkxa_ 13.5 11 Fold:DNA/RNA-binding 3-helical bundle Superfamily:ARID-like Family:ARID domain 18 c3gykC_ 12.9 13 PDB header:oxidoreductase Chain: C: PDB Molecule:27kda outer membrane protein; PDBTitle: the crystal structure of a thioredoxin-like oxidoreductase from2 silicibacter pomeroyi dss-3 19 c3gn3B_ 12.6 15 PDB header:structural genomics, unknown function Chain: B: PDB Molecule:putative protein-disulfide isomerase; PDBTitle: crystal structure of a putative protein-disulfide isomerase from2 pseudomonas syringae to 2.5a resolution. 20 d1ig6a_ 12.2 14 Fold:DNA/RNA-binding 3-helical bundle Superfamily:ARID-like Family:ARID domain 21 c2cjjA_ not modelled 11.0 8 PDB header:dna-binding protein Chain: A: PDB Molecule:radialis; PDBTitle: crystal structure of the myb domain of the rad2 transcription factor from antirrhinum majus 22 d2cjja1 not modelled 11.0 8 Fold:DNA/RNA-binding 3-helical bundle Superfamily:Homeodomain-like Family:Myb/SANT domain 23 d1mwpa_ not modelled 10.7 25 Fold:SRCR-like Superfamily:A heparin-binding domain Family:A heparin-binding domain 24 d1c20a_ not modelled 10.1 25 Fold:DNA/RNA-binding 3-helical bundle Superfamily:ARID-like Family:ARID domain 25 c3kzqE_ not modelled 10.0 9 PDB header:structural genomics, unknown function Chain: E: PDB Molecule:putative uncharacterized protein vp2116; PDBTitle: the crystal structure of the protein with unknown function from vibrio2 parahaemolyticus rimd 2210633 26 c3hd5A_ not modelled 10.0 15 PDB header:oxidoreductase Chain: A: PDB Molecule:thiol:disulfide interchange protein dsba; PDBTitle: crystal structure of a thiol:disulfide interchange protein2 dsba from bordetella parapertussis 27 d2g3ra1 not modelled 9.8 18 Fold:SH3-like barrel Superfamily:Tudor/PWWP/MBT Family:Tudor domain 28 c2eqyA_ not modelled 9.6 18 PDB header:dna binding protein Chain: A: PDB Molecule:jumonji, at rich interactive domain 1b; PDBTitle: solution structure of the arid domain of jarid1b protein 29 c2lm1A_ not modelled 9.2 14 PDB header:dna binding protein Chain: A: PDB Molecule:lysine-specific demethylase lid; PDBTitle: solution nmr structure of lysine-specific demethylase lid from2 drosophila melanogaster, northeast structural genomics consortium3 target fr824d 30 c4ffeX_ not modelled 9.2 21 PDB header:viral protein Chain: X: PDB Molecule:cpxv018 protein; PDBTitle: the structure of cowpox virus cpxv018 (omcp) 31 c2jxjA_ not modelled 8.8 14 PDB header:oxidoreductase Chain: A: PDB Molecule:histone demethylase jarid1a; PDBTitle: nmr structure of the arid domain from the histone h3k42 demethylase rbp2 32 c3mopC_ not modelled 8.2 14 PDB header:signaling protein, immune system Chain: C: PDB Molecule:myeloid differentiation primary response protein myd88; PDBTitle: the ternary death domain complex of myd88, irak4, and irak2 33 d2eiaa2 not modelled 7.6 29 Fold:Retrovirus capsid protein, N-terminal core domain Superfamily:Retrovirus capsid protein, N-terminal core domain Family:Retrovirus capsid protein, N-terminal core domain 34 d2hwna1 not modelled 7.6 18 Fold:Dimerization-anchoring domain of cAMP-dependent PK regulatory subunit Superfamily:Dimerization-anchoring domain of cAMP-dependent PK regulatory subunit Family:Dimerization-anchoring domain of cAMP-dependent PK regulatory subunit 35 c2dimA_ not modelled 7.5 11 PDB header:dna binding protein Chain: A: PDB Molecule:cell division cycle 5-like protein; PDBTitle: solution structure of the myb_dna-binding domain of human2 cell division cycle 5-like protein 36 c2yqeA_ not modelled 7.4 14 PDB header:dna binding protein Chain: A: PDB Molecule:jumonji/arid domain-containing protein 1d; PDBTitle: solution structure of the arid domain of jarid1d protein 37 d1m9dc_ not modelled 7.4 29 Fold:Retrovirus capsid protein, N-terminal core domain Superfamily:Retrovirus capsid protein, N-terminal core domain Family:Retrovirus capsid protein, N-terminal core domain 38 c1x41A_ not modelled 7.1 17 PDB header:transcription Chain: A: PDB Molecule:transcriptional adaptor 2-like, isoform b; PDBTitle: solution structure of the myb-like dna binding domain of2 human transcriptional adaptor 2-like, isoform b 39 c3n7nE_ not modelled 7.1 35 PDB header:replication Chain: E: PDB Molecule:monopolin complex subunit lrs4; PDBTitle: structure of csm1/lrs4 complex 40 d1h8ac1 not modelled 7.1 24 Fold:DNA/RNA-binding 3-helical bundle Superfamily:Homeodomain-like Family:Myb/SANT domain 41 d1z6ma1 not modelled 7.1 9 Fold:Thioredoxin fold Superfamily:Thioredoxin-like Family:DsbA-like 42 c3bciA_ not modelled 7.0 9 PDB header:oxidoreductase Chain: A: PDB Molecule:disulfide bond protein a; PDBTitle: crystal structure of staphylococcus aureus dsba 43 d1r2aa_ not modelled 6.2 18 Fold:Dimerization-anchoring domain of cAMP-dependent PK regulatory subunit Superfamily:Dimerization-anchoring domain of cAMP-dependent PK regulatory subunit Family:Dimerization-anchoring domain of cAMP-dependent PK regulatory subunit 44 c2rh0B_ not modelled 6.1 21 PDB header:nuclear protein Chain: B: PDB Molecule:nudc domain-containing protein 2; PDBTitle: crystal structure of nudc domain-containing protein 22 (13542905) from mus musculus at 1.95 a resolution 45 d1gvda_ not modelled 5.9 14 Fold:DNA/RNA-binding 3-helical bundle Superfamily:Homeodomain-like Family:Myb/SANT domain 46 c3ktmB_ not modelled 5.7 25 PDB header:cell adhesion, signaling protein Chain: B: PDB Molecule:amyloid beta a4 protein; PDBTitle: structure of the heparin-induced e1-dimer of the amyloid precursor2 protein (app) 47 c2l6wB_ not modelled 5.7 21 PDB header:membrane protein Chain: B: PDB Molecule:beta-type platelet-derived growth factor receptor; PDBTitle: pdgfr beta-tm 48 c2l6wA_ not modelled 5.7 21 PDB header:membrane protein Chain: A: PDB Molecule:beta-type platelet-derived growth factor receptor; PDBTitle: pdgfr beta-tm 49 d1r5la1 not modelled 5.6 17 Fold:RuvA C-terminal domain-like Superfamily:CRAL/TRIO N-terminal domain Family:CRAL/TRIO N-terminal domain 50 c2wlvA_ not modelled 5.5 24 PDB header:virus protein Chain: A: PDB Molecule:gag polyprotein; PDBTitle: structure of the n-terminal capsid domain of hiv-2 51 c2xgvA_ not modelled 5.5 24 PDB header:viral protein Chain: A: PDB Molecule:psiv capsid n-terminal domain; PDBTitle: structure of the n-terminal domain of capsid protein from2 rabbit endogenous lentivirus (relik) 52 d1beda_ not modelled 5.4 10 Fold:Thioredoxin fold Superfamily:Thioredoxin-like Family:DsbA-like 53 d1tuaa2 not modelled 5.3 16 Fold:Eukaryotic type KH-domain (KH-domain type I) Superfamily:Eukaryotic type KH-domain (KH-domain type I) Family:Eukaryotic type KH-domain (KH-domain type I) 54 c2rq5A_ not modelled 5.3 7 PDB header:transcription Chain: A: PDB Molecule:protein jumonji; PDBTitle: solution structure of the at-rich interaction domain (arid)2 of jumonji/jarid2 55 d2pxrc1 not modelled 5.3 29 Fold:Retrovirus capsid protein, N-terminal core domain Superfamily:Retrovirus capsid protein, N-terminal core domain Family:Retrovirus capsid protein, N-terminal core domain 56 d1k1fa_ not modelled 5.3 46 Fold:Bcr-Abl oncoprotein oligomerization domain Superfamily:Bcr-Abl oncoprotein oligomerization domain Family:Bcr-Abl oncoprotein oligomerization domain 57 d1wmga_ not modelled 5.2 12 Fold:DEATH domain Superfamily:DEATH domain Family:DEATH domain, DD 58 c2xgyA_ not modelled 5.1 18 PDB header:viral protein/isomerase Chain: A: PDB Molecule:relik capsid n-terminal domain; PDBTitle: complex of rabbit endogenous lentivirus (relik)capsid with2 cyclophilin a 59 c2pfcA_ not modelled 5.1 27 PDB header:unknown function Chain: A: PDB Molecule:hypothetical protein rv0098/mt0107; PDBTitle: structure of mycobacterium tuberculosis rv0098 60 c2ib1A_ not modelled 5.1 13 PDB header:apoptosis Chain: A: PDB Molecule:death domain containing membrane protein nradd; PDBTitle: solution structure of p45 death domain