Job Description O13527 Confidence 97.88% Date Mon Jul 2 19:10:08 BST 2012 Rank 29 Aligned Residues 192 % Identity 14% Template d1rw3a_ SCOP info DNA/RNA polymerases DNA/RNA polymerases Reverse transcriptase Resolution 3.00

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		692	.	.	.	.	.	.	.	700	.	.	.	.	.	.	.	.	.	710	.	.	.	.	.	.	.	.	.	720	.	.	.	.	.	.	.	.	.	730	.	.	.	.	.	.	.	.	.	740	.	.	.	.	.	.	.	.	.	750	.	.	.	.	.	.	.	.	.	760	.	.	.	.					.	.	.
Predicted Secondary structure																																																																											.	.	.	.
Query SS confidence																																																																											.	.	.	.
Query Sequence		I	E	A	Y	H	K	E	V	N	Q	L	L	K	M	N	T	W	D	T	D	K	Y	Y	D	R	K	E	I	D	P	K	R	V	I	N	S	M	F	I	F	N	K	K	R	D	G	T	H	K	A	R	F	V	A	R	G	D	I	Q	H	P	D	T	Y	D	T	G	M	Q	S	N	T	V	.	.	.	.	H	H	Y
Query Conservation																																																																											.	.	.	.
Alig confidence																													.	.	.	.	.	.	.	.	.	.	.																.	.	.	.	.	.	.	.	.												.	.	.	.
Template Conservation																													.	.	.	.	.	.	.	.	.	.	.																.	.	.	.	.	.	.	.	.
Template Sequence		R	L	G	I	K	P	H	I	Q	R	L	L	D	Q	G	I	L	V	P	C	Q	S	P	W	N	T	P	.	.	.	.	.	.	.	.	.	.	.	L	L	P	V	K	K	P	G	T	N	D	Y	R	P	V	.	.	.	.	.	.	.	.	.	Q	D	L	R	E	V	N	K	R	V	E	D	I	H	P	T	V	P
Template Known Secondary structure					S										T	T	S							S		B	B		.	.	.	.	.	.	.	.	.	.	.							S	S	S	S						.	.	.	.	.	.	.	.	.			T						T	B
Template Predicted Secondary structure																													.	.	.	.	.	.	.	.	.	.	.																.	.	.	.	.	.	.	.	.
Template SS confidence
		71	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.												.	.	100	.	.	.	.	.	.	.	.	.	110	.	.										.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130
		768	.	770	.	.	.	.	.	.	.	.	.	780	.	.	.	.	.	.	.	.	.	790	.	.	.	.	.	.	.	.	.	800					.	.	.	.	.	.	.	.	.	810	.	.	.	.	.	.	.	.	.	820	.	.	.	.	.	.	.	.	.	830	.	.	.	.	.	.	.	.	.	840	.	.	.
Predicted Secondary structure																																			.	.	.	.
Query SS confidence																																			.	.	.	.
Query Sequence		A	L	M	T	S	L	S	L	A	L	D	N	N	Y	Y	I	T	Q	L	D	I	S	S	A	Y	L	Y	A	D	I	K	E	E	.	.	.	.	L	Y	I	R	P	P	P	H	L	G	M	N	D	K	L	I	R	L	K	K	S	L	Y	G	L	K	Q	S	G	A	N	W	Y	E	T	I	K	S	Y	L	I	K	Q
Query Conservation																																			.	.	.	.
Alig confidence																																			.	.	.	.																																									.
Template Conservation																																																																															.
Template Sequence		N	P	Y	N	L	L	S	G	L	P	P	S	H	Q	W	Y	T	V	L	D	L	K	D	A	F	F	C	L	R	L	H	P	T	S	Q	P	L	F	A	F	E	W	R	D	P	E	M	G	I	S	G	Q	L	T	W	T	R	L	P	Q	G	F	K	N	S	P	T	L	F	D	E	A	L	H	R	D	L	.	A	D
Template Known Secondary structure								T	T			T	T									B	T	T	G	G	G	G	S	B	B		S	T	T	S	G	G	G						T	T	S	S	S								S	B			S	S		T	T														.
Template Predicted Secondary structure																																																																															.
Template SS confidence
		131	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.		.	.
		844	.	.	.	.	.	850	.	.	.	.	.	.	.	.	.	860	.	.	.	.	.	.	.	.	.	870	.	.	.	.	.	.	.	.	.	880	.	.	.	.	.	.	.	.	.	890	.				.	.	.	.	.	.	.	.	900	.	.	.	.	.	.	.	.	.	910	.	.	.	.
Predicted Secondary structure																																																		.	.	.
Query SS confidence																																																		.	.	.
Query Sequence		C	G	M	E	E	V	R	G	W	S	C	V	F	K	N	S	Q	V	T	I	C	L	F	V	D	D	M	I	L	F	S	K	D	L	N	A	N	K	K	I	I	T	T	L	K	K	Q	Y	.	.	.	D	T	K	I	I	N	L	G	E	S	D	N	E	I	Q	Y	D	I	L	G	L	E	I
Query Conservation																																																		.	.	.
Alig confidence		.	.	.	.	.	.	.	.	.	.																																							.	.	.
Template Conservation		.	.	.	.	.	.	.	.	.	.
Template Sequence		.	.	.	.	.	.	.	.	.	.	F	R	I	Q	H	P	D	L	I	L	L	Q	Y	V	D	D	L	L	L	A	A	T	S	E	L	D	C	Q	Q	G	T	R	A	L	L	Q	T	L	G	N	L	G	Y	R	A	S	A	K	K	A	Q	I	C	Q	K	Q	V	K	Y	L	G	Y	L	L
Template Known Secondary structure		.	.	.	.	.	.	.	.	.	.				T		T	T							T	T							S	S																			T			B		G	G	G				S	B	S	S				T	T
Template Predicted Secondary structure		.	.	.	.	.	.	.	.	.	.
Template SS confidence
												210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions