Job Description O13527 Confidence 99.88% Date Mon Jul 2 19:10:08 BST 2012 Rank 14 Aligned Residues 132 % Identity 16% Template d1hyva_ SCOP info Ribonuclease H-like motif Ribonuclease H-like Retroviral integrase, catalytic domain Resolution 1.70

Show / Hide SS confidence

Show / Hide Conservation and Alignment quality

		107	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		Q	Y	L	H	T	D	I	F	G	P	V	H	N	L	P	K	S	A	P	S	Y	F	I	S	F	T	D	E	T	T	K	L	R	W	V	Y	P	L	H	D	R	R	E	D	S	I	L	D	V	F	T	T	I	L	A	F	I	K	N	Q	F	Q	A	S	V	L	V	I	Q	M	D	R	G	S	E	Y	T	N	R	T
Query Conservation
Alig confidence								.	.	.	.	.	.	.	.																																											.	.	.	.			.	.
Template Conservation								.	.	.	.	.	.	.	.																																											.	.	.	.			.	.
Template Sequence		G	I	W	Q	L	D	.	.	.	.	.	.	.	.	T	H	L	E	G	K	V	I	L	V	A	V	H	V	A	S	G	Y	I	E	A	E	V	I	P	A	E	T	G	Q	E	T	A	Y	F	L	L	K	L	A	G	R	.	.	.	.	W	P	.	.	V	K	T	V	H	T	D	N	G	S	N	F	T	S	T	T
Template Known Secondary structure		T						.	.	.	.	.	.	.	.				T	T									T	T	T									S	S																	.	.	.	.	S		.	.							S		G	G	G	G		S
Template Predicted Secondary structure								.	.	.	.	.	.	.	.																																											.	.	.	.			.	.
Template SS confidence
		59	60	.	.	.	.									.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.					.	.			.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.
		187	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		L	H	K	F	L	E	K	N	G	I	T	P	C	Y	T	T	T	A	D	S	R	A	H	G	V	A	E	R	L	N	R	T	L	L	D	D	C	R	T	Q	L	Q	C	S	G	L	P	N	H	L	W	F	S	A	I	E	F	S	T	I	V	R	N	S	L	A	S	P	K	S	K	K	S	A	R	Q	H	A	G	L
Query Conservation
Alig confidence			.											.	.	.	.	.	.	.																												.	.	.	.															.	.
Template Conservation			.											.	.	.	.	.	.	.																												.	.	.	.															.	.
Template Sequence		V	.	K	A	A	W	W	A	G	I	K	Q	.	.	.	.	.	.	.	E	F	G	Q	G	V	I	E	S	M	N	K	E	L	K	K	I	I	G	Q	V	R	D	Q	A	E	H	.	.	.	.	L	K	T	A	V	Q	M	A	V	F	I	H	N	K	.	.	K	R	K	G	G	Y	S	A	G	E	R	I	V	D
Template Known Secondary structure			.					T	T					.	.	.	.	.	.	.																						G	G	G	S	S	S	.	.	.	.															.	.
Template Predicted Secondary structure			.											.	.	.	.	.	.	.																												.	.	.	.															.	.
Template SS confidence
		126		.	.	.	130	.	.	.	.	.	.								.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.					.	.	.	.	.	.	170	.	.	.	.	.	.	.			.	.	180	.	.	.	.	.	.	.	.	.	190	.

---

Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions