Job Description O13527 Confidence 99.85% Date Mon Jul 2 19:10:08 BST 2012 Rank 15 Aligned Residues 136 % Identity 10% Template d1c6va_ SCOP info Ribonuclease H-like motif Ribonuclease H-like Retroviral integrase, catalytic domain Resolution 3.00

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		103	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		Y	E	P	F	Q	Y	L	H	T	D	I	F	G	P	V	H	N	L	P	K	S	A	P	S	Y	F	I	S	F	T	D	E	T	T	K	L	R	W	V	Y	P	L	H	D	R	R	E	D	S	I	L	D	V	F	T	T	I	L	A	F	I	K	N	Q	F	Q	A	S	V	L	V	I	Q	M	D	R	G	S	E	Y
Query Conservation
Alig confidence														.	.	.	.	.	.	.																																								.	.	.	.					.	.
Template Conservation														.	.	.	.	.	.	.																																								.	.	.	.					.	.
Template Sequence		N	S	D	L	G	T	W	Q	M	D	C	T	.	.	.	.	.	.	.	H	L	E	G	K	I	V	I	V	A	V	H	V	A	S	G	F	I	E	A	E	V	I	P	Q	E	T	G	R	Q	T	A	L	F	L	L	K	L	A	.	.	.	.	G	R	W	P	.	.	I	T	H	L	H	T	D	N	G	A	N	F
Template Known Secondary structure					T	T								.	.	.	.	.	.	.			T	T									T	T	S									S	S		S													.	.	.	.	T	T	S		.	.										S	S	T
Template Predicted Secondary structure														.	.	.	.	.	.	.																																								.	.	.	.					.	.
Template SS confidence
		55	.	.	.	.	60	.	.	.	.	.	.								.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.					.	.	.	.			110	.	.	.	.	.	.	.	.	.	120	.
		183	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.		.	.	260	.
Predicted Secondary structure																																																																													.
Query SS confidence																																																																													.
Query Sequence		T	N	R	T	L	H	K	F	L	E	K	N	G	I	T	P	C	Y	T	T	T	A	D	S	R	A	H	G	V	A	E	R	L	N	R	T	L	L	D	D	C	R	T	Q	L	Q	C	S	G	L	P	N	H	L	W	F	S	A	I	E	F	S	T	I	V	R	N	S	L	A	S	P	K	S	K	.	K	S	A	R
Query Conservation																																																																													.
Alig confidence																		.	.	.	.	.	.	.	.	.	.	.																							.	.	.	.																							.
Template Conservation																		.	.	.	.	.	.	.	.	.	.	.																							.	.	.	.
Template Sequence		A	S	Q	E	V	K	M	V	A	W	W	A	G	I	E	H	.	.	.	.	.	.	.	.	.	.	.	T	F	G	E	A	M	N	H	H	L	K	N	Q	I	D	R	I	R	E	Q	A	N	.	.	.	.	S	V	E	T	I	V	L	M	A	V	H	C	M	N	H	K	R	R	G	G	I	G	D	M	T	P	A
Template Known Secondary structure		T	S	S										T				.	.	.	.	.	.	.	.	.	.	.						T	T	T								T	T	T	T	S	S	S	.	.	.	.															S				S	S	S	S
Template Predicted Secondary structure																		.	.	.	.	.	.	.	.	.	.	.																							.	.	.	.
Template SS confidence
		122	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.												.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.					160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.
		262	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		Q	H	A	G	L
Query Conservation
Alig confidence
Template Conservation
Template Sequence		E	R	L	I	N
Template Known Secondary structure
Template Predicted Secondary structure
Template SS confidence
		198	.	200	.	.

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
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