Job Description O13527 Confidence 99.96% Date Mon Jul 2 19:10:08 BST 2012 Rank 5 Aligned Residues 161 % Identity 20% Template c3l2tB_ PDB info PDB header:recombination/dna Chain: B: PDB Molecule:integrase; PDBTitle: crystal structure of the prototype foamy virus (pfv) intasome in2 complex with magnesium and mk0518 (raltegravir) Resolution 2.85 Å

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		100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		Q	N	S	Y	E	P	F	Q	Y	L	H	T	D	I	F	G	P	V	H	N	L	P	K	S	A	P	S	Y	F	I	S	F	T	D	E	T	T	K	L	R	W	V	Y	P	L	H	D	R	R	E	D	S	I	L	D	V	F	T	T	I	L	A	F	I	K	N	Q	F	Q	A	S	V	L	V	I	Q	M	D	R	G
Query Conservation
Alig confidence																							.	.																																							.	.	.	.	.	.
Template Conservation																							.	.																																							.	.	.	.	.	.
Template Sequence		D	R	P	Q	K	P	F	D	K	F	F	I	D	Y	I	G	P	L	P	P	S	.	.	Q	G	Y	L	Y	V	L	V	V	V	D	G	M	T	G	F	T	W	L	Y	P	T	K	A	P	S	T	S	A	T	V	K	S	L	N	V	L	T	.	.	.	.	.	.	S	I	A	I	P	K	V	I	H	S	D	Q	G
Template Known Secondary structure							T	T	S											S		B	.	.	T	T	B									T	T	T									S	S	S	S												T	.	.	.	.	.	.	T	T				S
Template Predicted Secondary structure																							.	.																																							.	.	.	.	.	.
Template SS confidence
		116	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.			.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.							.	.	.	.	.	180	.	.	.	.	.	.	.
		180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		S	E	Y	T	N	R	T	L	H	K	F	L	E	K	N	G	I	T	P	C	Y	T	T	T	A	D	S	R	A	H	G	V	A	E	R	L	N	R	T	L	L	D	D	C	R	T	Q	L	Q	C	S	G	L	P	N	H	L	W	F	S	A	I	E	F	S	T	I	V	R	N	S	L	A	S	P	K	S	K	K	S
Query Conservation
Alig confidence																																																								.	.	.
Template Conservation																																																								.	.	.
Template Sequence		A	A	F	T	S	S	T	F	A	E	W	A	K	E	R	G	I	H	L	E	F	S	T	P	Y	H	P	Q	S	S	G	K	V	E	R	K	N	S	D	I	K	R	L	L	T	K	L	L	V	G	R	P	T	K	.	.	.	W	Y	D	L	L	P	V	V	Q	L	A	L	N	N	T	Y	S	P	V	L	K	Y	T
Template Known Secondary structure						S										T	T								T	T																								T	T	S	T	T		.	.	.	G	G	G	G										T	S			T	T	T	T
Template Predicted Secondary structure																																																								.	.	.
Template SS confidence
		188	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.				.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.
		260	.	.	.	.	.	.	.	.	.	270	.
Predicted Secondary structure
Query SS confidence
Query Sequence		A	R	Q	H	A	G	L	A	G	L	D	I
Query Conservation
Alig confidence
Template Conservation
Template Sequence		P	H	Q	L	L	F	G	I	D	S	N	T
Template Known Secondary structure								S	S			S	S
Template Predicted Secondary structure
Template SS confidence
		265	.	.	.	.	270	.	.	.	.	.	.

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
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