Job Description O13527 Confidence 99.93% Date Mon Jul 2 19:10:08 BST 2012 Rank 10 Aligned Residues 143 % Identity 13% Template c3kksB_ PDB info PDB header:dna binding protein Chain: B: PDB Molecule:integrase; PDBTitle: crystal structure of catalytic core domain of biv integrase in crystal2 form ii Resolution 2.20 Å

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		107	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		Q	Y	L	H	T	D	I	F	G	P	V	H	N	L	P	K	S	A	P	S	Y	F	I	S	F	T	D	E	T	T	K	L	R	W	V	Y	P	L	H	D	R	R	E	D	S	I	L	D	V	F	T	T	I	L	A	F	I	K	N	Q	F	Q	A	S	V	L	V	I	Q	M	D	R	G	S	E	Y	T	N	R	T
Query Conservation
Alig confidence									.	.	.	.	.	.	.																																									.	.	.	.								.	.
Template Conservation									.	.	.	.	.	.	.																																									.	.	.	.								.	.
Template Sequence		H	L	W	Q	M	D	N	.	.	.	.	.	.	.	T	H	W	N	K	T	I	I	W	V	A	V	E	T	N	S	G	L	V	E	A	Q	V	I	P	E	E	T	A	L	Q	V	A	L	C	I	L	Q	L	I	.	.	.	.	Q	R	Y	T	V	L	H	.	.	L	H	S	D	N	G	P	C	F	T	A	H	R
Template Known Secondary structure									.	.	.	.	.	.	.				T	T									T	T	T	T								S	S	S														.	.	.	.			S			S		.	.					S						S
Template Predicted Secondary structure									.	.	.	.	.	.	.																																									.	.	.	.								.	.
Template SS confidence
		59	60	.	.	.	.	.								.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.					.	.	.	.	110	.	.			.	.	.	.	.	.	.	120	.	.	.	.	.
		187	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		L	H	K	F	L	E	K	N	G	I	T	P	C	Y	T	T	T	A	D	S	R	A	H	G	V	A	E	R	L	N	R	T	L	L	D	D	C	R	T	Q	L	Q	C	S	G	L	P	N	H	L	W	F	S	A	I	E	F	S	T	I	V	R	N	S	L	A	S	P	K	S	K	K	S	A	R	Q	H	A	G	L
Query Conservation
Alig confidence																																										.	.	.	.
Template Conservation																																										.	.	.	.
Template Sequence		I	E	N	L	C	K	Y	L	G	I	T	K	T	T	G	I	P	Y	N	P	Q	S	Q	G	V	V	E	R	A	H	R	D	L	K	D	R	L	A	A	Y	.	.	.	.	Q	G	D	C	E	T	V	E	A	A	L	S	L	A	L	V	S	L	N	K	K	R	G	G	I	G	G	H	T	P	Y	E	I	Y	L	E
Template Known Secondary structure									T	T						S	S		S																							.	.	.	.	G	G	G		S	S															S				G	G	G
Template Predicted Secondary structure																																										.	.	.	.
Template SS confidence
		126	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.					.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
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