Job Description O13527 Confidence 99.97% Date Mon Jul 2 19:10:08 BST 2012 Rank 3 Aligned Residues 181 % Identity 10% Template c3f9kV_ PDB info PDB header:viral protein, recombination Chain: V: PDB Molecule:integrase; PDBTitle: two domain fragment of hiv-2 integrase in complex with ledgf ibd Resolution 3.20 Å

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		39	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		F	I	E	C	L	R	M	P	M	H	R	Q	I	R	Y	S	L	K	N	N	T	I	T	Y	F	N	E	S	D	V	D	W	S	S	A	I	D	Y	Q	C	P	D	C	L	I	G	K	S	T	K	H	R	H	I	K	G	S	R	L	K	Y	Q	N	S	Y	E	P	F	Q	Y	L	H	T	D	I	F	G	P	V	H
Query Conservation
Alig confidence							.											.	.	.	.	.	.	.	.														.									.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.													.	.
Template Conservation							.											.	.	.	.	.	.	.	.														.									.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.													.	.
Template Sequence		E	H	E	K	Y	.	H	S	N	V	K	E	L	S	H	K	.	.	.	.	.	.	.	.	F	G	I	P	N	L	V	A	R	Q	I	V	N	.	S	C	A	Q	C	V	N	A	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	E	L	G	T	W	Q	M	D	C	T	H	L	.	.
Template Known Secondary structure							.											.	.	.	.	.	.	.	.														.	T	S	T	T					.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.		T	T										.	.
Template Predicted Secondary structure							.											.	.	.	.	.	.	.	.														.									.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.													.	.
Template SS confidence
		11	.	.	.	.		.	.	.	.	20	.	.	.	.	.									.	.	.	.	30	.	.	.	.	.	.	.	.		.	40	.	.	.	.	.	.																					.	.	.	50	.	.	.	.	.	.	.	.
		119	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		N	L	P	K	S	A	P	S	Y	F	I	S	F	T	D	E	T	T	K	L	R	W	V	Y	P	L	H	D	R	R	E	D	S	I	L	D	V	F	T	T	I	L	A	F	I	K	N	Q	F	Q	A	S	V	L	V	I	Q	M	D	R	G	S	E	Y	T	N	R	T	L	H	K	F	L	E	K	N	G	I	T	P
Query Conservation
Alig confidence		.	.	.	.	.																																							.	.	.	.	.	.
Template Conservation		.	.	.	.	.																																							.	.	.	.	.	.
Template Sequence		.	.	.	.	.	E	G	K	I	I	I	V	A	V	H	V	A	S	G	F	I	E	A	E	V	I	P	Q	E	S	G	R	Q	T	A	L	F	L	L	K	L	A	S	.	.	.	.	.	.	R	W	P	I	T	H	L	H	T	D	N	G	A	N	F	T	S	Q	E	V	K	M	V	A	W	W	I	G	I	E	Q
Template Known Secondary structure		.	.	.	.	.	T	T									T	T	T	T								S	S															T	.	.	.	.	.	.	T	S											T	T	T	T												T
Template Predicted Secondary structure		.	.	.	.	.																																							.	.	.	.	.	.
Template SS confidence
							69	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.							.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.
		199	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.		.	.	.	.	.	260	.	.	.	.	.	.
Predicted Secondary structure																																																										.
Query SS confidence																																																										.
Query Sequence		C	Y	T	T	T	A	D	S	R	A	H	G	V	A	E	R	L	N	R	T	L	L	D	D	C	R	T	Q	L	Q	C	S	G	L	P	N	H	L	W	F	S	A	I	E	F	S	T	I	V	R	N	S	L	A	S	P	.	K	S	K	K	S	A	R	Q	H	A	G	L
Query Conservation																																																										.
Alig confidence																																				.	.	.	.																			.
Template Conservation																																				.	.	.	.
Template Sequence		S	F	G	V	P	Y	N	P	Q	S	Q	G	V	V	E	A	M	N	H	H	L	K	N	Q	I	S	R	I	R	E	Q	A	N	T	.	.	.	.	I	E	T	I	V	L	M	A	V	H	C	M	N	F	K	R	R	G	G	I	G	D	M	T	P	S	E	R	L	I	N
Template Known Secondary structure				S	S		S	S	S	T	T	T	T																	G	G	G		S		.	.	.	.															T			B	T	T	T	T	B
Template Predicted Secondary structure																																				.	.	.	.
Template SS confidence
		138	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.					.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.

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Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
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