Job Description O13527 Confidence 98.83% Date Mon Jul 2 19:10:08 BST 2012 Rank 23 Aligned Residues 264 % Identity 14% Template c2opqA_ PDB info PDB header:transferase Chain: A: PDB Molecule:reverse transcriptase/ribonuclease h; PDBTitle: crystal structure of l100i mutant hiv-1 reverse2 transcriptase in complex with gw420867x. Resolution 2.80 Å

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		780	.	.	.	.	.	.	.	.	.	790	.	.	.	.	.	.	.	.	.	800						.	.	.	.	.	.	.	.	.	810	.	.	.	.	.	.	.	.	.	820	.	.	.	.	.	.	.	.	.	830	.	.	.	.	.	.	.	.	.	840	.	.	.	.	.	.	.	.	.	850	.	.	.	.
Predicted Secondary structure																							.	.	.	.	.
Query SS confidence																							.	.	.	.	.
Query Sequence		N	Y	Y	I	T	Q	L	D	I	S	S	A	Y	L	Y	A	D	I	K	E	E	.	.	.	.	.	L	Y	I	R	P	P	P	H	L	G	M	N	D	K	L	I	R	L	K	K	S	L	Y	G	L	K	Q	S	G	A	N	W	Y	E	T	I	K	S	Y	L	I	K	Q	C	G	M	E	E	V	R	G	W	S	C
Query Conservation																							.	.	.	.	.
Alig confidence																							.	.	.	.	.																																																.	.	.	.	.	.	.
Template Conservation																																																																											.	.	.	.	.	.	.
Template Sequence		K	K	S	V	T	V	L	D	V	G	D	A	Y	F	S	V	P	L	D	E	D	F	R	K	Y	T	A	F	T	I	P	S	I	N	N	E	T	P	G	I	R	Y	Q	Y	N	V	L	P	Q	G	W	K	G	S	P	A	I	F	Q	S	S	M	T	K	I	L	E	P	F	R	K	Q	N	.	.	.	.	.	.	.
Template Known Secondary structure			S								B	S	S	G	G	G	S	B							G	G	G							S	S	S	S	S								S	B			T	T		T	T																					.	.	.	.	.	.	.
Template Predicted Secondary structure																																																																											.	.	.	.	.	.	.
Template SS confidence
		103	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.
		855	.	.	.	.	860	.	.	.	.	.	.	.	.	.	870	.	.	.	.		.	.	.	.	.	880	.	.	.	.	.	.	.	.	.	890	.	.	.	.	.	.			.	.	.	900	.	.	.	.	.	.	.	.	.	910	.	.	.	.	.	.	.	.	.	920	.	.	.	.	.	.	.	.	.	930	.
Predicted Secondary structure																						.																							.	.
Query SS confidence																						.																							.	.
Query Sequence		V	F	K	N	S	Q	V	T	I	C	L	F	V	D	D	M	I	L	F	S	.	K	D	L	N	A	N	K	K	I	I	T	T	L	K	K	Q	Y	D	T	K	I	I	.	.	N	L	G	E	S	D	N	E	I	Q	Y	D	I	L	G	L	E	I	K	Y	Q	R	G	K	Y	M	K	L	G	M	E	K	S	L	T
Query Conservation																						.																							.	.
Alig confidence		.	.	.	.																	.																							.	.																			.	.	.						.	.	.	.	.	.	.	.	.
Template Conservation		.	.	.	.																																																												.	.	.						.	.	.	.	.	.	.	.	.
Template Sequence		.	.	.	.	P	D	I	V	I	Y	Q	Y	M	D	D	L	Y	V	G	S	D	L	E	I	G	Q	H	R	T	K	I	E	E	L	R	Q	H	L	L	R	W	G	L	T	T	P	D	K	K	H	Q	K	E	P	P	F	L	W	M	G	Y	E	L	.	.	.	H	P	D	K	W	.	.	.	.	.	.	.	.	.
Template Known Secondary structure		.	.	.	.	T	T							T	T								S																		T	T	T		B				T	T	T	S			S	S	B			T	T				.	.	.		S	S			.	.	.	.	.	.	.	.	.
Template Predicted Secondary structure		.	.	.	.																																																												.	.	.						.	.	.	.	.	.	.	.	.
Template SS confidence
						176	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.				.	.	.	.	.
		932	.	.	.	.	.	.	.	940	.	.	.	.	.	.	.	.	.	950	.	.	.	.	.	.	.	.	.	960	.	.	.	.	.	.	.	.	.	970	.	.	.	.	.	.	.	.	.	980	.	.	.	.	.	.	.	.	.	990	.	.	.	.	.	.	.	.	.	1000	.	.	.	.	.	.	.	.	.
Predicted Secondary structure																																																																																.	.
Query SS confidence																																																																																.	.
Query Sequence		E	K	L	P	K	L	N	V	P	L	N	P	K	G	K	K	L	R	A	P	G	Q	P	G	L	Y	I	D	Q	D	E	L	E	I	D	E	D	E	Y	K	E	K	V	H	E	M	Q	K	L	I	G	L	A	S	Y	V	G	Y	K	F	R	F	D	L	L	Y	Y	I	N	T	L	A	Q	H	I	L	F	P	.	.
Query Conservation																																																																																.	.
Alig confidence		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																															.																				.	.
Template Conservation		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																															.
Template Sequence		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	T	V	Q	P	I	V	L	P	E	K	D	S	W	T	V	N	D	I	Q	K	L	V	G	K	L	N	W	A	S	Q	.	I	Y	P	G	I	K	V	R	Q	L	K	L	L	R	G	T	K	A	L	T	E
Template Known Secondary structure		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.			S								S																			T	.	T		T	T				S				T	T	T	T				T	T
Template Predicted Secondary structure		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																															.
Template SS confidence
																														240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.		270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290
						1010	.	.	.	.	.	.	.	.	.	1020	.	.	.	.	.	.	.	.	.	1030	.	.	.	.	.	.	.	.	.	1040	.	.	.	.	.	.	.	.	.	1050	.	.	.	.	.	.	.	.	.	1060	.	.	.	.	.	.	.	.	.	1070	.	.	.	.	.	.	.	.	.	1080	.	.	.	.	.
Predicted Secondary structure		.	.	.	.
Query SS confidence		.	.	.	.
Query Sequence		.	.	.	.	S	R	Q	V	L	D	M	T	Y	E	L	I	Q	F	M	W	D	T	R	D	K	Q	L	I	W	H	K	N	K	P	T	E	P	D	N	K	L	V	A	I	S	D	A	S	Y	G	N	Q	P	Y	Y	K	S	Q	I	G	N	I	Y	L	L	N	G	K	V	I	G	G	K	S	T	K	A	S	L	T
Query Conservation		.	.	.	.
Alig confidence		.	.	.	.																								.							.	.	.	.	.	.									.	.	.	.	.
Template Conservation																													.							.	.	.	.	.	.									.	.	.	.	.
Template Sequence		V	I	P	L	T	E	E	A	E	L	E	L	A	E	N	R	E	I	L	K	E	P	V	H	G	V	Y	.	Y	D	P	S	K	D	.	.	.	.	.	.	L	I	A	E	I	Q	K	Q	.	.	.	.	.	G	Q	G	Q	W	T	Y	Q	I	Y	Q	E	P	F	K	N	L	K	T	G	K	Y	A	R	M	R	G
Template Known Secondary structure																						S							.	B		T	T	S		.	.	.	.	.	.									.	.	.	.	.	S	T	T										T	T													S
Template Predicted Secondary structure																													.							.	.	.	.	.	.									.	.	.	.	.
Template SS confidence
		292	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.		.	320	.	.	.	.							.	.	.	.	.	330	.	.						.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.
		1086	.	.	.	1090	.	.	.	.	.	.	.	.	.	1100	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		C	T	S	T	T	E	A	E	I	H	A	I	S	E	S	V	P	L	L	N	N	L
Query Conservation
Alig confidence
Template Conservation
Template Sequence		A	H	T	N	D	V	K	Q	L	T	E	A	V	Q	K	I	T	T	E	S	I	V
Template Known Secondary structure		S
Template Predicted Secondary structure
Template SS confidence
		360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions