Job Description O13527 Confidence 97.53% Date Mon Jul 2 19:10:08 BST 2012 Rank 34 Aligned Residues 122 % Identity 16% Template c2hb5A_ PDB info PDB header:hydrolase Chain: A: PDB Molecule:reverse transcriptase/ribonuclease h; PDBTitle: crystal structure of the moloney murine leukemia virus2 rnase h domain Resolution 1.59 Å

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		1042	.	.	.	.	.	.	.	1050	.	.	.	.	.	.	.	.	.	1060	.	.	.	.	.	.	.	.	.	1070	.	.	.	.	.	.	.	.	.	1080	.	.	.	.	.	.	.	.	.	1090	.	.	.	.	.	.	.	.	.	1100	.	.	.	.	.	.	.	.	.	1110	.	.	.	.	.	.	.	.	.	1120	.
Predicted Secondary structure
Query SS confidence
Query Sequence		P	D	N	K	L	V	A	I	S	D	A	S	Y	G	N	Q	P	Y	Y	K	S	Q	I	G	N	I	Y	L	L	N	G	K	V	I	G	G	K	S	T	K	A	S	L	T	C	T	S	T	T	E	A	E	I	H	A	I	S	E	S	V	P	L	L	N	N	L	S	Y	L	I	Q	E	L	N	K	K	P	I	I	K
Query Conservation
Alig confidence															.	.																												.	.																				.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation															.	.																												.	.																				.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence		P	D	A	D	H	T	W	Y	T	D	G	S	S	.	.	L	L	Q	E	G	Q	R	K	A	G	A	A	V	T	T	E	T	E	V	I	W	A	K	A	L	P	A	.	.	G	T	S	A	Q	R	A	E	L	I	A	L	T	Q	A	L	K	X	A	.	.	.	.	.	.	.	.	.	.	.	.	E	G	K	K	L
Template Known Secondary structure		T	T		S										.	.				T	T											S	S										T	.	.	T																		T	.	.	.	.	.	.	.	.	.	.	.	.	B	T	S
Template Predicted Secondary structure															.	.																												.	.																				.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
		19	20	.	.	.	.	.	.	.	.	.	30	.			.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.			.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.													.	.	80	.	.
		1122	.	.	.	.	.	.	.	1130	.	.	.	.	.	.	.	.	.	1140	.	.	.	.	.	.	.	.	.	1150	.	.	.	.	.	.	.	.	.	1160	.	.	.	.	.	.	.	.	.	1170	.						.	.	.	.	.	.	.	.	1180
Predicted Secondary structure																																																				.	.	.	.	.
Query SS confidence																																																				.	.	.	.	.
Query Sequence		G	L	L	T	D	S	R	S	T	I	S	I	I	K	S	T	N	E	E	K	F	R	N	R	F	F	G	T	K	A	M	R	L	R	D	E	V	S	G	N	N	L	Y	V	Y	Y	I	E	T	K	.	.	.	.	.	K	N	I	A	D	V	M	T	K
Query Conservation																																																				.	.	.	.	.
Alig confidence																						.																														.	.	.	.	.
Template Conservation																						.
Template Sequence		N	V	Y	T	D	S	R	Y	A	F	A	T	A	H	L	T	S	E	G	K	.	E	I	K	N	K	D	E	I	L	A	L	L	K	A	L	F	L	P	K	R	L	S	I	I	H	C	G	H	S	A	E	A	R	G	N	R	X	A	D	Q	A	A	R
Template Known Secondary structure														T	T						S	.	S		T	T											T	T	S	B	S										S
Template Predicted Secondary structure																						.
Template SS confidence
		83	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.		.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions