Job Description O13527 Confidence 99.95% Date Mon Jul 2 19:10:08 BST 2012 Rank 6 Aligned Residues 208 % Identity 14% Template c1ex4A_ PDB info PDB header:viral protein Chain: A: PDB Molecule:integrase; PDBTitle: hiv-1 integrase catalytic core and c-terminal domain Resolution 2.80 Å

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		103	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		Y	E	P	F	Q	Y	L	H	T	D	I	F	G	P	V	H	N	L	P	K	S	A	P	S	Y	F	I	S	F	T	D	E	T	T	K	L	R	W	V	Y	P	L	H	D	R	R	E	D	S	I	L	D	V	F	T	T	I	L	A	F	I	K	N	Q	F	Q	A	S	V	L	V	I	Q	M	D	R	G	S	E	Y
Query Conservation
Alig confidence						.									.	.	.	.	.	.	.																																							.	.	.	.					.	.
Template Conservation						.									.	.	.	.	.	.	.																																							.	.	.	.					.	.
Template Sequence		S	S	P	G	.	I	W	Q	L	D	C	T	H	.	.	.	.	.	.	.	L	E	G	K	V	I	L	V	A	V	H	V	A	S	G	Y	I	E	A	E	V	I	P	A	E	T	G	Q	E	T	A	Y	F	L	L	K	L	A	.	.	.	.	G	R	W	P	.	.	V	K	T	I	H	T	D	N	G	S	N	F
Template Known Secondary structure			G	G	G	.									.	.	.	.	.	.	.		T	T									T	T	T									S	S	S	S	T	T											.	.	.	.			S		.	.
Template Predicted Secondary structure						.									.	.	.	.	.	.	.																																							.	.	.	.					.	.
Template SS confidence
		56	.	.	.		60	.	.	.	.	.	.	.								.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.					.	.	.	.			110	.	.	.	.	.	.	.	.	.	120	.
		183	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.		.	.	.	.	.	260	.
Predicted Secondary structure																																																																										.
Query SS confidence																																																																										.
Query Sequence		T	N	R	T	L	H	K	F	L	E	K	N	G	I	T	P	C	Y	T	T	T	A	D	S	R	A	H	G	V	A	E	R	L	N	R	T	L	L	D	D	C	R	T	Q	L	Q	C	S	G	L	P	N	H	L	W	F	S	A	I	E	F	S	T	I	V	R	N	S	L	A	S	P	.	K	S	K	K	S	A	R
Query Conservation																																																																										.
Alig confidence																		.	.	.																															.	.	.	.																				.
Template Conservation																		.	.	.																															.	.	.	.
Template Sequence		T	G	A	T	V	R	A	A	C	D	W	A	G	I	K	Q	.	.	.	E	D	G	I	P	Q	S	Q	G	V	V	E	S	M	N	K	E	L	K	K	I	I	G	Q	V	R	D	Q	A	E	.	.	.	.	H	L	K	T	A	V	Q	M	A	V	F	I	H	N	K	K	R	K	G	G	I	G	G	Y	S	A	G
Template Known Secondary structure											T	T	T	T				.	.	.							S	S																		G	G	G		S	.	.	.	.	S	S																S	S	S	S	S
Template Predicted Secondary structure																		.	.	.																															.	.	.	.
Template SS confidence
		122	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.				.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.					.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.
		262	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.				.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.
Predicted Secondary structure																													.	.	.
Query SS confidence																													.	.	.
Query Sequence		Q	H	A	G	L	A	G	L	D	I	S	T	L	L	P	F	G	Q	P	V	I	V	N	D	H	N	P	.	.	.	N	S	K	I	H	P	R	G	I	P	G	Y	A	L	H	P	S	R	N	S	Y	G	Y	I	I	Y	L	P	S	L	K	K	T	V	D	T	T	N	Y	V	I	L	Q	G
Query Conservation																													.	.	.
Alig confidence																													.	.	.								.
Template Conservation																																							.
Template Sequence		E	R	I	V	D	I	I	A	T	D	I	Q	T	K	E	L	Q	K	Q	I	T	K	I	Q	N	F	R	V	Y	Y	R	D	S	R	N	S	L	.	W	K	G	P	A	K	L	L	W	K	G	E	G	A	V	V	I	Q	D	N	S	D	I	K	V	V	P	R	R	K	A	K	I	I	R	D
Template Known Secondary structure													T	T												T	S							S	S				.												S	S							S	S							G	G	G
Template Predicted Secondary structure																																							.
Template SS confidence
		198	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.		.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270

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Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
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