Job Description O13527 Confidence 100.00% Date Mon Jul 2 19:10:08 BST 2012 Rank 1 Aligned Residues 202 % Identity 19% Template c1c0mA_ PDB info PDB header:transferase Chain: A: PDB Molecule:protein (integrase); PDBTitle: crystal structure of rsv two-domain integrase Resolution 2.53 Å

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		99	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		Y	Q	N	S	Y	E	P	F	Q	Y	L	H	T	D	I	F	G	P	V	H	N	L	P	K	S	A	P	S	Y	F	I	S	F	T	D	E	T	T	K	L	R	W	V	Y	P	L	H	D	R	R	E	D	S	I	L	D	V	F	T	T	I	L	A	F	I	K	N	Q	F	Q	A	S	V	L	V	I	Q	M	D	R
Query Conservation
Alig confidence																			.	.	.																																													.	.	.	.	.
Template Conservation																			.	.	.																																													.	.	.	.	.
Template Sequence		N	P	R	G	L	G	P	L	Q	I	W	Q	T	D	F	T	L	.	.	.	E	P	R	M	A	P	R	S	W	L	A	V	T	V	D	T	A	S	S	A	I	V	V	T	Q	H	G	R	V	T	S	V	A	V	Q	H	H	W	A	T	A	I	A	V	.	.	.	.	.	L	G	R	P	K	A	I	K	T	D	N
Template Known Secondary structure			S			S	S	T	T	S									.	.	.		G	G	G		S	S									T	T	T									S	S																	.	.	.	.	.					S						S
Template Predicted Secondary structure																			.	.	.																																													.	.	.	.	.
Template SS confidence
		51	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.				.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.						.	.	.	.	.	.	.	.	120	.	.
		179	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.					.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.
Predicted Secondary structure																																																							.	.	.	.
Query SS confidence																																																							.	.	.	.
Query Sequence		G	S	E	Y	T	N	R	T	L	H	K	F	L	E	K	N	G	I	T	P	C	Y	T	T	T	A	D	S	R	A	H	G	V	A	E	R	L	N	R	T	L	L	D	D	C	R	T	Q	L	Q	C	S	G	.	.	.	.	L	P	N	H	L	W	F	S	A	I	E	F	S	T	I	V	R	N	S	L	A	S	P
Query Conservation																																																							.	.	.	.
Alig confidence																																																							.	.	.	.
Template Conservation
Template Sequence		G	S	C	F	T	S	K	S	T	R	E	W	L	A	R	W	G	I	A	H	T	T	G	I	P	G	N	S	Q	G	Q	A	M	V	E	R	A	N	R	L	L	K	D	R	I	R	V	L	A	E	G	D	G	F	M	K	R	I	P	T	S	K	Q	G	E	L	L	A	K	A	M	Y	A	L	N	H	K	E	R	G
Template Known Secondary structure							S											T								S	S	S	S	T	T	S																					T	T		S	S	S			G	G	G														S	S			S
Template Predicted Secondary structure
Template SS confidence
		123	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.
		255	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.					290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.
Predicted Secondary structure																																					.	.	.	.
Query SS confidence																																					.	.	.	.
Query Sequence		K	S	K	K	S	A	R	Q	H	A	G	L	A	G	L	D	I	S	T	L	L	P	F	G	Q	P	V	I	V	N	D	H	N	P	N	.	.	.	.	S	K	I	H	P	R	G	I	P	G	Y	A	L	H	P	S	R	N	S	Y	G	Y	I	I	Y
Query Conservation																																					.	.	.	.
Alig confidence																				.	.	.	.	.													.	.	.	.									.
Template Conservation																				.	.	.	.	.																									.
Template Sequence		E	N	T	K	T	P	I	Q	K	H	W	R	P	T	V	L	T	E	.	.	.	.	.	G	P	P	V	K	I	R	I	E	T	G	E	W	E	K	G	W	N	V	L	V	W	G	R	.	G	Y	A	A	V	K	N	R	D	T	D	K	V	I	W	V
Template Known Secondary structure		S		S	S								S					S	S	.	.	.	.	.									T	T	S													S	.	S							T	T	T
Template Predicted Secondary structure																				.	.	.	.	.																									.
Template SS confidence
		203	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220						.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.		.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
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