Job Description P43603 Confidence 99.88% Date Mon Jul 2 19:24:13 BST 2012 Rank 1 Aligned Residues 198 % Identity 12% Template c1mv3A_ PDB info PDB header:endocytosis/exocytosis Chain: A: PDB Molecule:myc box dependent interacting protein 1; PDBTitle: nmr structure of the tumor suppressor bin1: alternative2 splicing in melanoma and interaction with c-myc Resolution UNK

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		262	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.
Predicted Secondary structure
Query SS confidence
Query Sequence		R	S	T	R	R	R	A	Q	S	G	S	R	Y	T	F	D	D	D	D	D	D	D	D	Y	G	T	G	Y	S	R	N	S	R	L	A	P	T	N	S	G	G	S	G	G	K	L	D	D	P	S	G	A	S	S	Y	Y	A	S	H	R	R	S	G	T	A	Q	S	R	A	R	S	S	R	N	R	W	A	D	D	E
Query Conservation
Alig confidence
Template Conservation
Template Sequence		G	S	P	A	A	T	P	E	I	R	V	N	H	E	P	E	P	A	G	G	A	T	P	G	A	T	L	P	K	S	P	S	Q	L	R	K	G	P	P	V	P	P	P	P	K	H	T	P	S	K	E	V	K	Q	E	Q	I	L	S	L	F	E	D	T	F	V	P	E	I	S	V	T	T	P	S	Q	P	A	E	A
Template Known Secondary structure																																			S										S
Template Predicted Secondary structure
Template SS confidence
		271	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350
		342	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.	.	.	.	.	.	.	400	.	.	.	.	.	.	.	.	.	410	.	.	.	.	.	.	.	.	.	420	.
Predicted Secondary structure
Query SS confidence
Query Sequence		Y	D	D	Y	D	D	D	Y	E	S	G	Y	R	R	G	N	G	R	D	R	T	K	D	R	E	V	D	D	L	S	N	R	F	S	K	S	R	I	S	S	A	S	T	P	Q	T	S	Q	G	R	F	T	A	P	T	S	P	S	T	S	S	P	K	A	V	A	L	Y	S	F	A	G	E	E	S	G	D	L	P	F
Query Conservation
Alig confidence
Template Conservation
Template Sequence		S	E	V	A	G	G	T	Q	P	A	A	G	A	Q	E	P	G	E	T	A	A	S	E	A	A	S	S	S	L	P	A	V	V	V	E	T	F	P	A	T	V	N	G	T	V	E	G	G	S	G	A	G	R	L	D	L	P	P	G	F	M	F	K	V	Q	A	Q	H	D	Y	T	A	T	D	T	D	E	L	Q	L
Template Known Secondary structure							S	S																																															S	S			T	T								S	S		B				S	T	T				B
Template Predicted Secondary structure
Template SS confidence
		351	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.	.	.	.	.	.	.	400	.	.	.	.	.	.	.	.	.	410	.	.	.	.	.	.	.	.	.	420	.	.	.	.	.	.	.	.	.	430
		422	.	.	.	.	.	.	.	430	.	.	.				.	.	.	.	.	.	440	.	.											.	.	.	.	.	.	.	450	.	.	.	.	.	.	.	.	.
Predicted Secondary structure														.	.	.										.	.	.	.	.	.	.	.	.	.
Query SS confidence														.	.	.										.	.	.	.	.	.	.	.	.	.
Query Sequence		R	K	G	D	V	I	T	I	L	K	K	S	.	.	.	D	S	Q	N	D	W	W	T	G	.	.	.	.	.	.	.	.	.	.	R	V	N	G	R	E	G	I	F	P	A	N	Y	V	E	L	V
Query Conservation														.	.	.										.	.	.	.	.	.	.	.	.	.
Alig confidence														.	.	.										.	.	.	.	.	.	.	.	.	.
Template Conservation
Template Sequence		K	A	G	D	V	V	L	V	I	P	F	Q	N	P	E	E	Q	D	E	G	W	L	M	G	V	K	E	S	D	W	N	Q	H	K	K	L	E	K	C	R	G	V	F	P	E	N	F	T	E	R	V
Template Known Secondary structure			S	S									S		G	G	G	S		T	T												T	G	G	G	G	G	G	T						S	T	T
Template Predicted Secondary structure
Template SS confidence
		431	.	.	.	.	.	.	.	.	440	.	.	.	.	.	.	.	.	.	450	.	.	.	.	.	.	.	.	.	460	.	.	.	.	.	.	.	.	.	470	.	.	.	.	.	.	.	.	.	480	.

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
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