05/07/2012 15:20:42 : INFO  : Run start: Thu Jul  5 15:20:42 BST 2012
05/07/2012 15:20:42 : INFO  : Initialised job
05/07/2012 15:20:42 : INFO  : Initialised job:
Sequence
>batch____
MGINNPIPRSLKSETKKAAKILASFVKPNQVFGADQVIPPDVLKRAKGLAIITILKAGFL
FSGRAGSGVIVARLKDGTWSAPSAIAMAGAGAGGMVGIELTDFVFILNTQDAVKSFSEFG
TITLGGNVSVSAGPLGRSAEAAASASAGGVAAVFAYSKSKGLFAGVSVEGSAIIERREAN
RKFYGDNCTAKMILSGRIRPPPAVDPLFRVLESRAFNYRPSNGGRGSFDDDEDDYYDDDD
YYNDIPSSFSSTDASSTRPNTRSTRRRAQSGSRYTFDDDDDDDDYGTGYSRNSRLAPTNS
GGSGGKLDDPSGASSYYASHRRSGTAQSRARSSRNRWADDEYDDYDDDYESGYRRGNGRD
RTKDREVDDLSNRFSKSRISSASTPQTSQGRFTAPTSPSTSSPKAVALYSFAGEESGDLP
FRKGDVITILKKSDSQNDWWTGRVNGREGIFPANYVELV

05/07/2012 15:20:43 : INFO  : Checked sequence
05/07/2012 15:20:43 : INFO  : Finding homologues with PSI-BLAST
05/07/2012 15:20:43 : INFO  : PSI-BLAST 3 iterations
05/07/2012 15:23:08 : INFO  : PSI-BLAST 5 iterations
05/07/2012 15:25:35 : INFO  : Finished PSI-BLAST
05/07/2012 15:25:35 : INFO  : Running Buildali to generate a3m file
05/07/2012 15:35:14 : INFO  : Converting to HMM
05/07/2012 15:35:15 : INFO  : Calibrating HMM
05/07/2012 15:35:26 : INFO  : Searching HMM database
05/07/2012 15:45:25 : INFO  : Finished buildali
05/07/2012 15:45:25 : INFO  : Predicting secondary structure
05/07/2012 15:45:26 : INFO  : Predicted secondary structure (PSI-Pred)
05/07/2012 15:45:26 : INFO  : Predicting Disordered regions
05/07/2012 15:45:26 : INFO  : Predicted Disorder (Disopred)
05/07/2012 15:45:26 : INFO  : Running memsat_svm check
05/07/2012 15:46:46 : INFO  : Running memsat_svm full
05/07/2012 15:49:33 : INFO  : Predicted Transmembrane (memsat_svm) ID 'd36135c7a58bec3a'
05/07/2012 15:49:33 : INFO  : Initialising fold library search
05/07/2012 15:49:33 : INFO  : Initialised search input
05/07/2012 15:49:33 : INFO  : Building Ensemble models
05/07/2012 15:49:33 : INFO  : Building hh.c1mv3A_.model.1.pdb
05/07/2012 15:49:33 : INFO  : Building hh.c1griA_.model.2.pdb
05/07/2012 15:49:34 : INFO  : cpying /bmm/www/servers/phyre2/public_html/phyre2_output/d36135c7a58bec3a/hh.c1griA_.model.2.pdb to /bmm/www/servers/phyre2/public_html/phyre2_output/d36135c7a58bec3a/c1griA_.2.pdb
05/07/2012 15:49:34 : INFO  : Building hh.c3nmzD_.model.3.pdb
05/07/2012 15:49:34 : INFO  : cpying /bmm/www/servers/phyre2/public_html/phyre2_output/d36135c7a58bec3a/hh.c3nmzD_.model.3.pdb to /bmm/www/servers/phyre2/public_html/phyre2_output/d36135c7a58bec3a/c3nmzD_.6.pdb
05/07/2012 15:49:34 : INFO  : Building hh.c2dlpA_.model.4.pdb
05/07/2012 15:49:34 : INFO  : cpying /bmm/www/servers/phyre2/public_html/phyre2_output/d36135c7a58bec3a/hh.c2dlpA_.model.4.pdb to /bmm/www/servers/phyre2/public_html/phyre2_output/d36135c7a58bec3a/c2dlpA_.7.pdb
05/07/2012 15:49:34 : INFO  : Building hh.d1oota_.model.5.pdb
05/07/2012 15:49:35 : INFO  : cpying /bmm/www/servers/phyre2/public_html/phyre2_output/d36135c7a58bec3a/hh.d1oota_.model.5.pdb to /bmm/www/servers/phyre2/public_html/phyre2_output/d36135c7a58bec3a/d1oota_.8.pdb
05/07/2012 15:49:35 : INFO  : Building c1mv3A_.1.pdb
05/07/2012 15:49:35 : INFO  : Building c1griA_.2.pdb
05/07/2012 15:49:35 : INFO  : Building c2rqrA_.3.pdb
05/07/2012 15:49:36 : INFO  : Building d1ng2a2.4.pdb
05/07/2012 15:49:36 : INFO  : Building c2lqnA_.5.pdb
05/07/2012 15:49:36 : INFO  : Building c3nmzD_.6.pdb
05/07/2012 15:49:37 : INFO  : Building c2dlpA_.7.pdb
05/07/2012 15:49:37 : INFO  : Building d1oota_.8.pdb
05/07/2012 15:49:37 : INFO  : Building c1x43A_.9.pdb
05/07/2012 15:49:38 : INFO  : Building c2l3sA_.10.pdb
05/07/2012 15:49:38 : INFO  : Building c2dx1A_.11.pdb
05/07/2012 15:49:38 : INFO  : Building c2eyzA_.12.pdb
05/07/2012 15:49:39 : INFO  : Building c1x2qA_.13.pdb
05/07/2012 15:49:39 : INFO  : Building c2csqA_.14.pdb
05/07/2012 15:49:39 : INFO  : Building c2ed0A_.15.pdb
05/07/2012 15:49:40 : INFO  : Building c2eyyA_.16.pdb
05/07/2012 15:49:40 : INFO  : Building c2djqA_.17.pdb
05/07/2012 15:49:40 : INFO  : Building c1wyxA_.18.pdb
05/07/2012 15:49:41 : INFO  : Building c2ysqA_.19.pdb
05/07/2012 15:49:41 : INFO  : Building c2eyxA_.20.pdb
05/07/2012 15:49:44 : INFO  : Finished HH model building
05/07/2012 15:49:44 : WARN  : Set python to /bmm/www/servers/phyre2/bin//newpython/python2.6
05/07/2012 15:49:47 : INFO  : html domain output complete ID 'd36135c7a58bec3a'
05/07/2012 16:00:01 : INFO  : Run end  : Thu Jul  5 16:00:01 BST 2012
