Job Description P32790 Confidence 20.12% Date Mon Jul 2 19:16:44 BST 2012 Rank 369 Aligned Residues 64 % Identity 8% Template c2c35F_ PDB info PDB header:polymerase Chain: F: PDB Molecule:dna-directed rna polymerase ii 19 kda PDBTitle: subunits rpb4 and rpb7 of human rna polymerase ii Resolution 2.70 Å

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		22	.	.	.	.	.	.	.	30	.	.		.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.					.	.	.	.	.	.	90	.	.	.	.	.	.
Predicted Secondary structure													.																																																				.	.	.	.
Query SS confidence													.																																																				.	.	.	.
Query Sequence		L	A	I	Q	E	D	D	L	L	Y	L	.	L	Q	K	S	D	I	D	D	W	W	T	V	K	K	R	V	I	G	S	D	S	E	E	P	V	G	L	V	P	S	T	Y	I	E	E	A	P	V	L	K	K	V	R	A	I	Y	D	Y	E	Q	V	.	.	.	.	Q	N	A	D	E	E	L	T	F	H	E	N	D
Query Conservation													.																																																				.	.	.	.
Alig confidence													.											.	.	.	.	.	.	.	.																			.	.	.	.	.	.	.									.	.	.	.
Template Conservation																								.	.	.	.	.	.	.	.																			.	.	.	.	.	.	.
Template Sequence		F	R	P	F	K	G	E	V	V	D	A	V	V	T	Q	V	N	K	V	G	L	F	.	.	.	.	.	.	.	.	T	E	I	G	P	M	S	C	F	I	S	R	H	S	I	P	S	E	.	.	.	.	.	.	.	M	E	F	D	P	N	S	N	P	P	C	Y	K	T	M	D	E	D	I	V	I	Q	Q	D	D
Template Known Secondary structure						T	T												T	T				.	.	.	.	.	.	.	.				T	T							G	G	G	S		S	S	.	.	.	.	.	.	.					S	S	S	S	S						T	T	S	S					T	T
Template Predicted Secondary structure																								.	.	.	.	.	.	.	.																			.	.	.	.	.	.	.
Template SS confidence
		77	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.									.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.								.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.
		97	.	.	100
Predicted Secondary structure
Query SS confidence
Query Sequence		V	F	D	V
Query Conservation
Alig confidence
Template Conservation
Template Sequence		E	I	R	L
Template Known Secondary structure
Template Predicted Secondary structure
Template SS confidence
		142	.	.	.

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions