 |
| Job Description | P32790 | | Confidence | 89.35% | Date | Mon Jul 2 19:16:44 BST 2012 |
| Rank | 232 | Aligned Residues | 91 |
| % Identity | 14% | Template | c1xovA_ |
| PDB info |
PDB header:hydrolase | Chain: A: PDB Molecule:ply protein; |
PDBTitle: the crystal structure of the listeria monocytogenes bacteriophage psa2 endolysin plypsa
|
| Resolution | 1.80 Å |
|
 |
|   |   |
24 | . | . | . | . | . | 30 | . | . | . | . | . | . | . | . | . | 40 | . | . | . | . | . | . | . | . | . | 50 | . | . | . | . | . | . | . | . | . | 60 | . | . | . | . | . | . | . | . | |
|
|
|
|
|
|
. | 70 | . | . | . | . | . | . | . | . | . | 80 | . | . | . | . | . | . | . | . | . | 90 | . | |
|
|
|
|
| Predicted Secondary structure |   |
|
|
|
|
|  |  |  |  |  |  |  |
|
|
|
|
|
|  |  |  |  |  |
|
|
|
|
|
|
|
|
|
|  |  |  |  |  |
|
|  |  |  |  |
| . | . | . | . | . | . | . |
|
|
|
|  |  |  |  |  |  |
|
|
|
|
|
|
|
|
|
|
|
|
| . | . | . | . | . |
| Query SS confidence |   |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| . |
. |
. |
. |
. |
. |
. |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| . |
. |
. |
. |
. |
| Query Sequence |   |
I | Q | E | D | D | L | L | Y | L | L | Q | K | S | D | I | D | D | W | W | T | V | K | K | R | V | I | G | S | D | S | E | E | P | V | G | L | V | P | S | T | Y | I | E | E | A | . |
. |
. |
. |
. |
. |
. |
P | V | L | K | K | V | R | A | I | Y | D | Y | E | Q | V | Q | N | A | D | E | E | L | T | . |
. |
. |
. |
. |
| Query Conservation |   |
  |   |   |
|
|   |
|   |   |   |   |   |   |   |   |   |   |
|
|   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |
|   |   |
|   |   |
|
|   |   |   | . | . | . | . | . | . | . |   |   |   |   |   |   |   |
|
|   |   |
|   |   |   |   |   |   |   |   |
|
|
| . | . | . | . | . |
| Alig confidence |   |
|
|
|
|
|
|
|
|
|
|
|
|
| . | . |
|
|
|
|
| . | . | . | . | . | . | . |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| . | . | . | . | . | . | . |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| . | . | . | . | . |
| Template Conservation |   |
  |   |   |
|   |   |   |   |   |   |
|   |   | . | . |   |   |
|
|
| . | . | . | . | . | . | . |   |   |   |
|
|
|   |   |
|   |   |   |   |
|   |   |   |   |   |   |   |   |   |
|
|   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |
|   |   |   |   |   |   |   |
|   |   |
|
|
| Template Sequence |   |
Y | K | A | G | S | S | L | L | V | Y | E | H | N | . |
. |
K | Y | W | Y | K | . |
. |
. |
. |
. |
. |
. |
A | Y | I | N | D | K | L | C | Y | I | Y | K | S | F | C | I | S | N | G | K | K | D | A | K | G | R | I | K | V | R | I | K | S | A | K | D | L | R | I | P | V | W | N | N | T | K | L | N | S | G | K | I | K |
| Template Known Secondary structure |   |
 |  | T | T |
|  |  |  |  |  |  |
| S | . | . | S | S |  |  |  | . | . | . | . | . | . | . |  |  |  | T | T |  |  |  |  |  |  | G | G | G |  |  |  |
|
|
|
| S | T | T |
|
|  |  |  |  |  |
|
| T | T | T |
|
|  |  |  |  | S | S | T | T |
| S | S | S | S |  |  |
| Template Predicted Secondary structure |   |
|
|
|
|
|
|
|
|  |  |  |  |
| . | . |
|  |  |  |  | . | . | . | . | . | . | . |  |  |  |
|
|  |  |  |  |  |
|  |  |  |  |  |  |
|
|
|
|
|
|
|
|  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
|
|
|
|
|
|
|
|  |  |  |
| Template SS confidence |   |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|   |   |
208 | . | 210 | . | . | . | . | . | . | . | . | . | 220 | |
|
. | . | . | . | . | |
|
|
|
|
|
|
. | . | . | . | 230 | . | . | . | . | . | . | . | . | . | 240 | . | . | . | . | . | . | . | . | . | 250 | . | . | . | . | . | . | . | . | . | 260 | . | . | . | . | . | . | . | . | . | 270 | . | . | . | . | . | . | . | . |
|   |
|   |   |
|
92 | . | . | . | . | . | . | . | 100 | . | . | . | . | . | . | . | . | . | 110 | . | . | . | . | . | . | . | . | . | 120 | . | . | . | . | . | . |
| Predicted Secondary structure |   |
. |
|
|
|
|
|  |  |  |  |  |
|
|
|
|
|
|  |  |  |  |  |  |
|
|
|
|  |  |  |  |  |  |  |  |  |
| Query SS confidence |   |
. |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| Query Sequence |   |
. |
F | H | E | N | D | V | F | D | V | F | D | D | K | D | A | D | W | L | L | V | K | S | T | V | S | N | E | F | G | F | I | P | G | N | Y |
| Query Conservation |   |
. |
|   |   |
|   |   |
|   |
|   |   |   |   |
|   |   |
|   |   |   |   |   |   |   |   |   |   |   |
|   |   |
|   |   |
|
| Alig confidence |   |
. |
|
|
|
|
|
|
|
|
|
|
| . |
|
|
|
|
|
| . | . |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| Template Conservation |   |
  |   |   |   |
|   |   |   |   |   |   |   | . |   |   |   |   |   |   | . | . |   |   |
|   |   |   |   |   |   |
|
|   |   |   |
|
| Template Sequence |   |
W | Y | S | P | G | T | K | L | S | W | Y | D | . |
N | K | K | G | Y | L | . |
. |
E | L | W | Y | E | K | D | G | W | Y | Y | T | A | N | Y |
| Template Known Secondary structure |   |
 |  |
| T | T |
|  |  |  |  |  |
| . |
| S | S | S | S |  | . | . |  |  |  |  | T | T | T |  |  |  |  |  |
| G | G |
| Template Predicted Secondary structure |   |
 |  |  |
|
|
|  |  |  |  |  |  | . |  |
|
|
|  |  | . | . |  |  |  |  |
|
|
|
|  |  |  |  |  |  |  |
| Template SS confidence |   |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|   |   |
279 | 280 | . | . | . | . | . | . | . | . | . | 290 | |
. | . | . | . | . | . | |
|
. | . | . | 300 | . | . | . | . | . | . | . | . | . | 310 | . |
|   |
No model constructed - rank, confidence too low
Phyre is for academic use only
| Please cite: Protein structure prediction on
the web: a case study using the Phyre server |
| Kelley LA and Sternberg MJE. Nature Protocols
4, 363 - 371 (2009) [pdf] [Import into BibTeX] |
|   |
|
|
|