Job Description P32790 Confidence 24.03% Date Mon Jul 2 19:16:44 BST 2012 Rank 343 Aligned Residues 66 % Identity 9% Template c1nt9G_ PDB info PDB header:transcription, transferase Chain: G: PDB Molecule:dna-directed rna polymerase ii 19 kd polypeptide; PDBTitle: complete 12-subunit rna polymerase ii Resolution 4.20 Å

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		22	.	.	.	.	.	.	.	30	.	.		.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100
Predicted Secondary structure													.
Query SS confidence													.
Query Sequence		L	A	I	Q	E	D	D	L	L	Y	L	.	L	Q	K	S	D	I	D	D	W	W	T	V	K	K	R	V	I	G	S	D	S	E	E	P	V	G	L	V	P	S	T	Y	I	E	E	A	P	V	L	K	K	V	R	A	I	Y	D	Y	E	Q	V	Q	N	A	D	E	E	L	T	F	H	E	N	D	V	F	D	V
Query Conservation													.
Alig confidence													.											.	.	.	.	.	.	.	.																																.	.	.	.	.
Template Conservation																								.	.	.	.	.	.	.	.																																.	.	.	.	.
Template Sequence		F	K	P	F	K	G	E	V	V	D	G	T	V	V	S	C	S	Q	H	G	F	E	.	.	.	.	.	.	.	.	V	Q	V	G	P	M	K	V	F	V	T	K	H	L	M	P	Q	D	L	T	F	N	A	G	S	N	P	P	S	Y	Q	.	.	.	.	.	S	S	E	D	V	I	T	I	K	S	R	I	R	V
Template Known Secondary structure						T	T												T	T				.	.	.	.	.	.	.	.				S	S	S						T	T	T	S	S	S	S				B	T	T					S	S	S	.	.	.	.	.						S	S
Template Predicted Secondary structure																								.	.	.	.	.	.	.	.																																.	.	.	.	.
Template SS confidence
		79	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100									.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.						.	.	.	.	.	.	.	.	140	.	.	.	.	.

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions