Job Description P32790 Confidence 36.03% Date Mon Jul 2 19:16:44 BST 2012 Rank 295 Aligned Residues 76 % Identity 17% Template c1m1gB_ PDB info PDB header:transcription Chain: B: PDB Molecule:transcription antitermination protein nusg; PDBTitle: crystal structure of aquifex aeolicus n-utilization2 substance g (nusg), space group p2(1) Resolution 2.00 Å

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		31	.	.	.	.	.	.	.	.	40			.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.
Predicted Secondary structure												.	.
Query SS confidence												.	.
Query Sequence		Y	L	L	Q	K	S	D	I	D	D	.	.	W	W	T	V	K	K	R	V	I	G	S	D	S	E	E	P	V	G	L	V	P	S	T	Y	I	E	E	A	P	V	L	K	K	V	R	A	I	Y	D	Y	E	Q	V	Q	N	A	D	E	E	L	T	F	H	E	N	D	V	F	D	V	F	D	D	K	D	A	D	W
Query Conservation												.	.
Alig confidence												.	.					.	.	.	.	.	.																																																					.	.	.	.	.	.
Template Conservation																		.	.	.	.	.	.																																																					.	.	.	.	.	.
Template Sequence		Y	I	L	I	K	A	H	M	N	D	K	L	L	M	A	I	.	.	.	.	.	.	E	K	T	P	H	V	F	R	P	V	M	V	G	G	K	P	V	P	L	K	E	E	E	V	Q	N	I	L	N	Q	I	K	R	G	V	K	P	S	K	V	E	F	E	K	G	D	Q	V	R	V	I	E	.	.	.	.	.	.
Template Known Secondary structure																		.	.	.	.	.	.		T	S	T	T								T	T															T	T	T	S	S	S							S			T	T							S	.	.	.	.	.	.
Template Predicted Secondary structure																		.	.	.	.	.	.																																																					.	.	.	.	.	.
Template SS confidence
		138	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.							.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.
		109	110	.	.	.	.	.	.	.	.	.	120	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		L	L	V	K	S	T	V	S	N	E	F	G	F	I
Query Conservation
Alig confidence		.	.	.	.
Template Conservation		.	.	.	.
Template Sequence		.	.	.	.	G	P	F	M	N	F	T	G	T	V
Template Known Secondary structure		.	.	.	.	S	T	T	T	T
Template Predicted Secondary structure		.	.	.	.
Template SS confidence
						206	.	.	.	210	.	.	.	.	.

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions