Job Description O13516 Confidence 99.89% Date Mon Jul 2 19:10:06 BST 2012 Rank 5 Aligned Residues 116 % Identity 29% Template d2gy9d1 SCOP info Alpha-L RNA-binding motif Alpha-L RNA-binding motif Ribosomal protein S4 Resolution 15.00

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		2	.	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.
Predicted Secondary structure
Query SS confidence
Query Sequence		P	R	A	P	R	T	Y	S	K	T	Y	S	T	P	K	R	P	Y	E	S	S	R	L	D	A	E	L	K	L	A	G	E	F	G	L	K	N	K	K	E	I	Y	R	I	S	F	Q	L	S	K	I	R	R	A	A	R	D	L	L	T	R	D	E	K	D	P	K	R	L	F	E	G	N	A	L	I	R	R	L	V
Query Conservation
Alig confidence												.	.																											.	.	.	.	.	.	.	.																						.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation												.	.																											.	.	.	.	.	.	.	.																						.	.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence		E	Q	A	P	G	Q	H	G	A	R	.	.	K	P	R	L	S	D	Y	G	V	Q	L	R	E	K	Q	K	V	R	R	I	Y	G	V	L	E	R	.	.	.	.	.	.	.	.	Q	F	R	N	Y	Y	K	E	A	A	R	L	K	G	N	T	G	E	N	L	L	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Known Secondary structure			S		S	S	S	S	S	S	S	.	.																						T					.	.	.	.	.	.	.	.												S	S	S								.	.	.	.	.	.	.	.	.	.	.	.	.
Template Predicted Secondary structure												.	.																											.	.	.	.	.	.	.	.																						.	.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
		34	.	.	.	.	.	40	.	.	.			.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.									70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90
		82	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.
Predicted Secondary structure
Query SS confidence
Query Sequence		R	V	G	V	L	S	E	D	K	K	K	L	D	Y	V	L	A	L	K	V	E	D	F	L	E	R	R	L	Q	T	Q	V	Y	K	L	G	L	A	K	S	V	H	H	A	R	V	L	I	T	Q	R	H	I	A	V	G	K	Q	I	V	N	I	P	S	F	M	V	R	L	D	S	E	K	H	I	D	F	A	P	T
Query Conservation
Alig confidence		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																																																		.	.
Template Conservation		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																																																		.	.
Template Sequence		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	A	L	L	E	G	R	L	D	N	V	V	Y	R	M	G	F	G	A	T	R	A	E	A	R	Q	L	V	S	H	K	A	I	M	V	N	G	R	V	V	N	I	A	S	Y	Q	V	S	P	N	.	.	D	V	V	S	I	R	E	K
Template Known Secondary structure		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.				T	T	B									T	S	S	S	S										T	T					S	S	S	B				T	T		B			T	T	.	.		B					T	T
Template Predicted Secondary structure		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																																																		.	.
Template SS confidence
																							91	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.			140	.	.	.	.	.	.	.
		162	.
Predicted Secondary structure
Query SS confidence
Query Sequence		S	P
Query Conservation
Alig confidence
Template Conservation
Template Sequence		A	K
Template Known Secondary structure		G	G
Template Predicted Secondary structure
Template SS confidence
		148	.

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
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