Job Description O13516 Confidence 100.00% Date Mon Jul 2 19:10:06 BST 2012 Rank 2 Aligned Residues 193 % Identity 66% Template c3iz6C_ PDB info PDB header:ribosome Chain: C: PDB Molecule:40s ribosomal protein s9 (s4p); PDBTitle: localization of the small subunit ribosomal proteins into a 5.5 a2 cryo-em map of triticum aestivum translating 80s ribosome Resolution 5.50 Å

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		1	.	.	.	.	.	.	.	.	10	.	.	.	.			.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.
Predicted Secondary structure																.	.
Query SS confidence																.	.
Query Sequence		M	P	R	A	P	R	T	Y	S	K	T	Y	S	T	.	.	P	K	R	P	Y	E	S	S	R	L	D	A	E	L	K	L	A	G	E	F	G	L	K	N	K	K	E	I	Y	R	I	S	F	Q	L	S	K	I	R	R	A	A	R	D	L	L	T	R	D	E	K	D	P	K	R	L	F	E	G	N	A	L	I	R
Query Conservation																.	.
Alig confidence																.	.
Template Conservation
Template Sequence		M	P	R	A	P	R	T	Y	S	K	T	Y	S	T	K	K	P	R	R	P	Y	E	K	E	R	L	D	A	E	L	K	L	V	G	E	Y	G	L	R	C	K	R	E	L	W	R	V	Q	Y	A	L	S	R	I	R	N	N	A	R	H	L	L	T	L	D	E	K	N	P	R	R	I	F	E	G	E	A	L	L	R
Template Known Secondary structure															S			S	S						S																T			S	T	T											S	S	S									T												T
Template Predicted Secondary structure
Template SS confidence
		1	.	.	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80
		79	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		R	L	V	R	V	G	V	L	S	E	D	K	K	K	L	D	Y	V	L	A	L	K	V	E	D	F	L	E	R	R	L	Q	T	Q	V	Y	K	L	G	L	A	K	S	V	H	H	A	R	V	L	I	T	Q	R	H	I	A	V	G	K	Q	I	V	N	I	P	S	F	M	V	R	L	D	S	E	K	H	I	D	F
Query Conservation
Alig confidence
Template Conservation
Template Sequence		R	M	N	R	Y	G	L	L	A	D	G	Q	N	K	L	D	Y	V	L	A	L	T	V	E	N	F	L	A	R	R	L	Q	T	L	V	F	K	A	G	M	A	K	S	I	H	H	A	R	V	L	I	R	Q	R	H	I	R	V	G	R	Q	I	V	N	I	P	S	F	M	V	R	V	E	S	E	K	H	I	D	F
Template Known Secondary structure		S	S	S	T	T	S								T	T					T	T						T	T	S				S	S											S		T	T	S						S	T	T	T	S												S	S	S		S	S	S	S		S
Template Predicted Secondary structure
Template SS confidence
		81	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160
		159	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		A	P	T	S	P	F	G	G	A	R	P	G	R	V	A	R	R	N	A	A	R	K	A	E	A	S	G	E	A	A	D	E	A	D	E
Query Conservation
Alig confidence
Template Conservation
Template Sequence		S	L	T	S	P	F	G	G	G	P	P	G	R	V	K	R	K	N	Q	K	K	A	S	G	G	G	G	D	G	E	E	E	D	E	E
Template Known Secondary structure		S	S																			T	T	T	S	S	S	S
Template Predicted Secondary structure
Template SS confidence
		161	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
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