Job Description O13516 Confidence 99.86% Date Mon Jul 2 19:10:06 BST 2012 Rank 6 Aligned Residues 118 % Identity 37% Template c3bbnD_ PDB info PDB header:ribosome Chain: D: PDB Molecule:ribosomal protein s4; PDBTitle: homology model for the spinach chloroplast 30s subunit fitted to 9.4a2 cryo-em map of the 70s chlororibosome. Resolution 9.40 Å

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		2	.	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.
Predicted Secondary structure
Query SS confidence
Query Sequence		P	R	A	P	R	T	Y	S	K	T	Y	S	T	P	K	R	P	Y	E	S	S	R	L	D	A	E	L	K	L	A	G	E	F	G	L	K	N	K	K	E	I	Y	R	I	S	F	Q	L	S	K	I	R	R	A	A	R	D	L	L	T	R	D	E	K	D	P	K	R	L	F	E	G	N	A	L	I	R	R	L	V
Query Conservation
Alig confidence																																								.	.	.	.	.	.	.	.																						.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation																																								.	.	.	.	.	.	.	.																						.	.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence		P	R	A	G	S	D	L	R	N	Q	S	R	S	G	K	R	S	Q	Y	R	I	R	L	E	E	K	Q	K	L	R	F	H	Y	G	I	T	E	R	.	.	.	.	.	.	.	.	Q	L	L	K	Y	V	R	I	A	R	K	A	K	G	S	T	G	Q	V	L	L	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Known Secondary structure			S			S	S	S		S	S	S							T	T					T	T									T					.	.	.	.	.	.	.	.												S	S	S		T	T	T	T	T	T	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Predicted Secondary structure																																								.	.	.	.	.	.	.	.																						.	.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
		26	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.									.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.
		82	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.
Predicted Secondary structure
Query SS confidence
Query Sequence		R	V	G	V	L	S	E	D	K	K	K	L	D	Y	V	L	A	L	K	V	E	D	F	L	E	R	R	L	Q	T	Q	V	Y	K	L	G	L	A	K	S	V	H	H	A	R	V	L	I	T	Q	R	H	I	A	V	G	K	Q	I	V	N	I	P	S	F	M	V	R	L	D	S	E	K	H	I	D	F	A	P	T
Query Conservation
Alig confidence		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																																																		.	.
Template Conservation		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																																																		.	.
Template Sequence		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	Q	L	L	E	M	R	L	D	N	I	L	F	R	L	G	M	A	P	T	I	P	G	A	R	Q	L	V	N	H	R	H	I	L	V	N	G	R	I	V	D	I	P	S	Y	R	C	K	P	Q	.	.	D	T	I	M	A	R	D	E
Template Known Secondary structure		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.					S	B	T	T	T	T	T	T	T	T	T	S	S	S	S	S									T	T					T	T						T	T		B			T	T	.	.							S	S
Template Predicted Secondary structure		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																																																		.	.
Template SS confidence
																							85	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.			.	.	.	.	.	.	140	.
		162	.
Predicted Secondary structure
Query SS confidence
Query Sequence		S	P
Query Conservation
Alig confidence
Template Conservation
Template Sequence		Q	K
Template Known Secondary structure		T	T
Template Predicted Secondary structure
Template SS confidence
		142	.

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
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