Job Description O13516 Confidence 100.00% Date Mon Jul 2 19:10:06 BST 2012 Rank 1 Aligned Residues 179 % Identity 63% Template c2xzmD_ PDB info PDB header:ribosome Chain: D: PDB Molecule:ribosomal protein s4 containing protein; PDBTitle: crystal structure of the eukaryotic 40s ribosomal2 subunit in complex with initiation factor 1. this file3 contains the 40s subunit and initiation factor for4 molecule 1 Resolution 3.93 Å

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		1	.	.	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80
Predicted Secondary structure
Query SS confidence
Query Sequence		M	P	R	A	P	R	T	Y	S	K	T	Y	S	T	P	K	R	P	Y	E	S	S	R	L	D	A	E	L	K	L	A	G	E	F	G	L	K	N	K	K	E	I	Y	R	I	S	F	Q	L	S	K	I	R	R	A	A	R	D	L	L	T	R	D	E	K	D	P	K	R	L	F	E	G	N	A	L	I	R	R	L
Query Conservation
Alig confidence
Template Conservation
Template Sequence		M	G	K	T	Y	I	N	T	S	K	T	Y	S	T	P	R	R	P	Y	E	K	E	R	L	D	N	E	M	K	L	I	G	T	F	G	L	K	N	K	R	E	V	W	R	V	Q	M	I	L	A	K	F	R	K	A	A	R	E	L	L	T	L	D	P	K	D	P	R	R	L	F	E	G	S	A	L	L	R	R	M
Template Known Secondary structure							S										S	S	T	T															T	T			S																							T	S		T	T
Template Predicted Secondary structure
Template SS confidence
		1	.	.	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80
		81	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160
Predicted Secondary structure
Query SS confidence
Query Sequence		V	R	V	G	V	L	S	E	D	K	K	K	L	D	Y	V	L	A	L	K	V	E	D	F	L	E	R	R	L	Q	T	Q	V	Y	K	L	G	L	A	K	S	V	H	H	A	R	V	L	I	T	Q	R	H	I	A	V	G	K	Q	I	V	N	I	P	S	F	M	V	R	L	D	S	E	K	H	I	D	F	A	P
Query Conservation
Alig confidence
Template Conservation
Template Sequence		F	K	Y	G	L	L	S	E	Q	E	R	K	L	D	Y	V	L	G	L	T	I	H	K	L	M	E	R	R	L	Q	T	R	V	F	K	L	N	L	A	N	S	I	H	H	S	R	V	L	I	R	Q	R	H	I	K	V	G	K	N	L	V	N	V	P	S	F	M	V	R	T	D	S	E	K	S	I	D	F	A	S
Template Known Secondary structure				T	T	S	S		T	T			S	T					S								T	T	B								T	T		S	S	S	T	T						T	T	T	T					T	T						S			B			S	T	T	S	S					T	T
Template Predicted Secondary structure
Template SS confidence
		81	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160
		161	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		T	S	P	F	G	G	A	R	P	G	R	V	A	R	R	N	A	A	R
Query Conservation
Alig confidence
Template Conservation
Template Sequence		T	S	P	L	G	G	G	R	E	G	R	T	K	R	K	N	A	K	K
Template Known Secondary structure		S	T	T	T	T	T			S
Template Predicted Secondary structure
Template SS confidence
		161	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
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