Return to main results Retrieve Phyre Job Id

Job DescriptionO13549
Confidence9.80%DateMon Jul 2 19:10:13 BST 2012
Rank6Aligned Residues22
% Identity27%Templatec3vieF_
PDB info PDB header:viral protein/antiviral proteinChain: F: PDB Molecule:sifuvirtide; PDBTitle: hiv-gp41 fusion inhibitor sifuvirtide
Resolution1.80 Å

  Insertion relative to template
  Deletion relative to template
  Catalytic residue from the CSA
 
Detailed help on interpreting your alignment


   14.....20.........30.....
Predicted Secondary structure 




Query SS confidence 





















Query Sequence  VTKVIYQMKGKSQPKRERKKQN
Query Conservation 





















Alig confidence 





















Template Conservation 

  

 


 

 





  
Template Sequence  YTRQIYRILEESQEQQDRNERD
Template Known Secondary structure 
Template Predicted Secondary structure 
Template SS confidence 





















   127..130.........140........
 
Download:Text version FASTA pairwise alignment 3D Model in PDB format

View in Jmol

Send structure to FirstGlance for more viewing options


Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
 
© Structural Bioinformatics Group, Imperial College, London
Lawrence Kelley, Benjamin Jefferys 
Disclaimer
Terms and Conditions