Job Description O13549 Confidence 2.67% Date Mon Jul 2 19:10:13 BST 2012 Rank 43 Aligned Residues 38 % Identity 13% Template c2xgvA_ PDB info PDB header:viral protein Chain: A: PDB Molecule:psiv capsid n-terminal domain; PDBTitle: structure of the n-terminal domain of capsid protein from2 rabbit endogenous lentivirus (relik) Resolution 2.00 Å

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		52	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		M	S	K	L	Y	S	K	R	L	P	N	R	C	L	N	F	K	T	A	S	Q	L	L	W	I	A	K	M	Q	I	V	Q	T	K	I	N	R	E
Query Conservation
Alig confidence
Template Conservation
Template Sequence		Y	W	G	L	I	S	Q	D	L	S	S	R	E	Q	V	Q	L	L	E	V	V	P	G	L	Q	A	D	K	D	M	L	G	A	Y	L	E	E	R
Template Known Secondary structure							T	T	T															S
Template Predicted Secondary structure
Template SS confidence
		39	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
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