Job Description O13549 Confidence 2.43% Date Mon Jul 2 19:10:13 BST 2012 Rank 55 Aligned Residues 38 % Identity 24% Template c2wlvA_ PDB info PDB header:virus protein Chain: A: PDB Molecule:gag polyprotein; PDBTitle: structure of the n-terminal capsid domain of hiv-2 Resolution 1.25 Å

Show / Hide SS confidence

Show / Hide Conservation and Alignment quality

		52	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		M	S	K	L	Y	S	K	R	L	P	N	R	C	L	N	F	K	T	A	S	Q	L	L	W	I	A	K	M	Q	I	V	Q	T	K	I	N	R	E
Query Conservation
Alig confidence
Template Conservation
Template Sequence		G	F	Q	A	L	S	E	G	C	T	P	Y	D	I	N	Q	M	L	N	C	V	G	D	H	Q	A	A	M	Q	I	I	R	E	I	I	N	E	E
Template Known Secondary structure							T	T	T												T	T	T	T
Template Predicted Secondary structure
Template SS confidence
		38	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.

No model constructed - rank, confidence too low

---

Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions