 |
| Job Description | O13549 | | Confidence | 3.56% | Date | Mon Jul 2 19:10:13 BST 2012 |
| Rank | 25 | Aligned Residues | 45 |
| % Identity | 16% | Template | c2eqrA_ |
| PDB info |
PDB header:transcription | Chain: A: PDB Molecule:nuclear receptor corepressor 1; |
PDBTitle: solution structure of the first sant domain from human2 nuclear receptor corepressor 1
|
| Resolution | UNK |
|
|   |   |
23 | . | . | . | . | . | . | 30 | . | . | . | . | . | . | . | |
|
|
|
|
|
|
. | . | 40 | . | . | . | . | . | . | . | . | . | 50 | . | . | . | . | . | . | . | . | . | 60 | . | . | . | . | . | . | . |
| Predicted Secondary structure |   |
|
|
|
|
|  |  |  |  |  |  |  |  |  |  | . | . | . | . | . | . | . |  |  |  |  |  |  |  |
|  |  |  |  |  |  |  |  |  |  |  |  |  |  |
|
|  |  |  |
|
|  |
| Query SS confidence |   |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| . |
. |
. |
. |
. |
. |
. |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| Query Sequence |   |
G | K | S | Q | P | K | R | E | R | K | K | Q | N | Y | W | . |
. |
. |
. |
. |
. |
. |
V | L | K | S | L | W | K | R | P | Q | R | Q | A | I | M | S | K | L | Y | S | K | R | L | P | N | R | C | L | N | F |
| Query Conservation |   |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| . | . | . | . | . | . | . |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| Alig confidence |   |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| . | . | . | . | . | . | . |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| Template Conservation |   |
|
|
|
|   |   |
|   |
|
|   |   |   |   |
|
|   |
|
|   |   |   |
|   |   |   |   |   |   |   |
|   |   |
|   |   |
|
|   |   |   |   |   |
|
|   |   |   |   |   |   |   |
| Template Sequence |   |
G | S | S | G | S | S | G | D | R | Q | F | M | N | V | W | T | D | H | E | K | E | I | F | K | D | K | F | I | Q | H | P | K | N | F | G | L | I | A | S | Y | L | E | R | K | S | V | P | D | C | V | L | Y |
| Template Known Secondary structure |   |
|
|
| S |
|
|
|
|
| S |
|
|
| S |
|
|  |  |  |  |  |  |  |  |  |  |  |  |  | S | T | T |
|  |  |  |  |  |  |  |
| T | T | S |
|  |  |  |  |  |  |  |
| Template Predicted Secondary structure |   |
|
|
|
|
|  |  |
|
|
|
|
|
|
|
|
|  |  |  |  |  |  |  |  |  |  |  |  |  |  |
|
|
|  |  |  |  |  |  |  |
|
|
|
|
|  |  |  |  |  |  |  |
| Template SS confidence |   |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|   |   |
1 | . | . | . | . | . | . | . | . | 10 | . | . | . | . | . | . | . | . | . | 20 | . | . | . | . | . | . | . | . | . | 30 | . | . | . | . | . | . | . | . | . | 40 | . | . | . | . | . | . | . | . | . | 50 | . | . |
|   |
No model constructed - rank, confidence too low
Phyre is for academic use only
| Please cite: Protein structure prediction on
the web: a case study using the Phyre server |
| Kelley LA and Sternberg MJE. Nature Protocols
4, 363 - 371 (2009) [pdf] [Import into BibTeX] |
|   |
|
|
|