 |
| Job Description | O13525 | | Confidence | 4.99% | Date | Mon Jul 2 19:10:08 BST 2012 |
| Rank | 84 | Aligned Residues | 34 |
| % Identity | 18% | Template | d1rp3a2 |
| SCOP info | DNA/RNA-binding 3-helical bundle
| Sigma3 and sigma4 domains of RNA polymerase sigma factors
| Sigma4 domain
|
| Resolution | 2.30 |
|
|   |   |
289 | 290 | . | . | . | . | . | . | . | . | . | 300 | . | . | . | . | . | . | . | . | . | 310 | . | . | . | . | . | . | . | . | . | 320 | . | . |
| Predicted Secondary structure |   |
|
|
|  |  |  |  |  |  |  |  |
|
|
|
|
|
|
|  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
| Query SS confidence |   |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| Query Sequence |   |
E | K | D | V | T | A | L | R | K | E | L | K | I | T | L | P | P | D | L | R | T | M | R | K | E | R | A | A | L | R | K | E | I | D |
| Query Conservation |   |
|
|
|
|
|
|
|
|   |
|
|
|
|   |
|
|
|   |   |
|   |
|
|   |   |   |
|   |
|   |   |   |   |   |
| Alig confidence |   |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| Template Conservation |   |
  |   |
|   |   |
|
|
|   |   |
|   |
|
|   |   |
|
|   |   |   |   |   |
|
|   |   |   |
|
|   |   |
|   |
| Template Sequence |   |
E | L | P | A | K | E | V | A | K | I | L | E | T | S | V | S | R | V | S | Q | L | K | A | K | A | L | E | R | L | R | E | M | L | S |
| Template Known Secondary structure |   |
|
|
|  |  |  |  |  |  |  | T | T | S |
|  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
| Template Predicted Secondary structure |   |
|
|
|  |  |  |  |  |  |  |  |
|
|
|  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
|
| Template SS confidence |   |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|   |   |
200 | . | . | . | . | . | . | . | . | . | 210 | . | . | . | . | . | . | . | . | . | 220 | . | . | . | . | . | . | . | . | . | 230 | . | . | . |
|   |
No model constructed - rank, confidence too low
Phyre is for academic use only
| Please cite: Protein structure prediction on
the web: a case study using the Phyre server |
| Kelley LA and Sternberg MJE. Nature Protocols
4, 363 - 371 (2009) [pdf] [Import into BibTeX] |
|   |
|
|
|