Job Description O13525 Confidence 7.95% Date Mon Jul 2 19:10:08 BST 2012 Rank 47 Aligned Residues 77 % Identity 22% Template d1m9fd_ SCOP info Retrovirus capsid protein, N-terminal core domain Retrovirus capsid protein, N-terminal core domain Retrovirus capsid protein, N-terminal core domain Resolution 1.73

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		87	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.		.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.
Predicted Secondary structure																				.
Query SS confidence																				.
Query Sequence		H	V	P	L	H	R	Y	E	K	L	L	L	F	A	I	S	G	W	.	N	S	F	F	H	P	E	D	G	Y	N	I	V	Q	L	G	E	A	T	A	L	P	V	F	L	E	N	L	K	Q	T	M	L	S	D	S	S	G	R	R	I	L	K	E	Q	P	N	I	T	T	E	I	L	H	M	D	K	L	A	K	L
Query Conservation																				.
Alig confidence								.	.											.																					.																									.	.
Template Conservation								.	.																																.																									.	.
Template Sequence		H	Q	A	I	S	P	.	.	R	T	L	N	A	W	V	K	V	V	E	E	K	A	F	S	P	E	V	I	P	M	F	S	A	L	S	E	G	A	T	.	P	Q	D	L	N	T	M	L	N	T	V	G	G	H	Q	A	A	M	Q	M	L	K	E	T	.	.	I	N	E	E	A	A	E	W	D	R	L	H	P	V
Template Known Secondary structure								.	.													S	T	T		T	T									T	T	T			.										T			S												.	.												S
Template Predicted Secondary structure								.	.																																.																									.	.
Template SS confidence
		12	.	.	.	.	.			.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.		.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.			.	.	.	.	.	.	.	80	.	.	.	.	.	.
		166	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		P	H	N
Query Conservation
Alig confidence
Template Conservation
Template Sequence		A	M	G
Template Known Secondary structure				S
Template Predicted Secondary structure
Template SS confidence
		87	.	.

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions