Job Description O13525 Confidence 4.82% Date Mon Jul 2 19:10:08 BST 2012 Rank 86 Aligned Residues 77 % Identity 12% Template c2xgyA_ PDB info PDB header:viral protein/isomerase Chain: A: PDB Molecule:relik capsid n-terminal domain; PDBTitle: complex of rabbit endogenous lentivirus (relik)capsid with2 cyclophilin a Resolution 1.80 Å

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		85	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.			.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.
Predicted Secondary structure																							.	.
Query SS confidence																							.	.
Query Sequence		N	G	H	V	P	L	H	R	Y	E	K	L	L	L	F	A	I	S	G	W	N	.	.	S	F	F	H	P	E	D	G	Y	N	I	V	Q	L	G	E	A	T	A	L	P	V	F	L	E	N	L	K	Q	T	M	L	S	D	S	S	G	R	R	I	L	K	E	Q	P	N	I	T	T	E	I	L	H	M	D	K	L
Query Conservation																							.	.
Alig confidence										.	.												.	.																				.																.	.								.	.
Template Conservation										.	.																																	.																.	.								.	.
Template Sequence		M	E	Y	E	P	V	G	P	.	.	G	L	I	A	A	W	L	K	Q	V	Q	E	H	G	L	T	H	P	A	T	I	T	Y	F	G	V	I	S	I	N	F	T	.	S	V	D	I	N	M	L	L	N	V	T	P	G	A	E	.	.	K	Q	L	V	I	D	K	.	.	I	K	E	K	A	I	A	W	D	E	M
Template Known Secondary structure				B						.	.															T	T	S											T	T	T			.											S					.	.								.	.
Template Predicted Secondary structure										.	.																																	.																.	.								.	.
Template SS confidence
		3	.	.	.	.	.	.	10			.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.		.	.	.	.	.	.	.	50	.	.	.	.	.	.	.			.	.	60	.	.	.	.			.	.	.	.	.	70	.	.	.	.	.
		163	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		A	K	L	P	H	N	T
Query Conservation
Alig confidence				.
Template Conservation				.
Template Sequence		H	P	.	P	P	P	A
Template Known Secondary structure		S		.				T
Template Predicted Secondary structure				.
Template SS confidence
		84	.		.	.	.	.

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
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