Email l.a.kelley@imperial.ac.uk Description O13535 Date Mon Jul 2 19:10:10 BST 2012 Unique Job ID b73bcf582ec0214e

Detailed template information

# Template Alignment Coverage 3D Model Confidence % i.d. Template Information

1 c1c0mA_ 100.0 20 PDB header:transferase Chain: A: PDB Molecule:protein (integrase); PDBTitle: crystal structure of rsv two-domain integrase 2 c3f9kV_ 100.0 11 PDB header:viral protein, recombination Chain: V: PDB Molecule:integrase; PDBTitle: two domain fragment of hiv-2 integrase in complex with ledgf ibd 3 d1asua_ 100.0 19 Fold:Ribonuclease H-like motif Superfamily:Ribonuclease H-like Family:Retroviral integrase, catalytic domain 4 d1c0ma2 100.0 19 Fold:Ribonuclease H-like motif Superfamily:Ribonuclease H-like Family:Retroviral integrase, catalytic domain 5 c1k6yB_ 100.0 15 PDB header:transferase Chain: B: PDB Molecule:integrase; PDBTitle: crystal structure of a two-domain fragment of hiv-1 integrase 6 c3l2tB_ 100.0 21 PDB header:recombination/dna Chain: B: PDB Molecule:integrase; PDBTitle: crystal structure of the prototype foamy virus (pfv) intasome in2 complex with magnesium and mk0518 (raltegravir) 7 c3hpgC_ 100.0 16 PDB header:transferase Chain: C: PDB Molecule:integrase; PDBTitle: visna virus integrase (residues 1-219) in complex with ledgf2 ibd: examples of open integrase dimer-dimer interfaces 8 c1ex4A_ 99.9 14 PDB header:viral protein Chain: A: PDB Molecule:integrase; PDBTitle: hiv-1 integrase catalytic core and c-terminal domain 9 c3dlrA_ 99.9 21 PDB header:transferase Chain: A: PDB Molecule:integrase; PDBTitle: crystal structure of the catalytic core domain from pfv2 integrase 10 c3nf9A_ 99.9 16 PDB header:hydrolase/hydrolase inhibitor Chain: A: PDB Molecule:integrase; PDBTitle: structural basis for a new mechanism of inhibition of hiv integrase2 identified by fragment screening and structure based design 11 c3kksB_ 99.9 13 PDB header:dna binding protein Chain: B: PDB Molecule:integrase; PDBTitle: crystal structure of catalytic core domain of biv integrase in crystal2 form ii 12 d1cxqa_ 99.9 20 Fold:Ribonuclease H-like motif Superfamily:Ribonuclease H-like Family:Retroviral integrase, catalytic domain 13 d1exqa_ 99.9 14 Fold:Ribonuclease H-like motif Superfamily:Ribonuclease H-like Family:Retroviral integrase, catalytic domain 14 d1hyva_ 99.9 17 Fold:Ribonuclease H-like motif Superfamily:Ribonuclease H-like Family:Retroviral integrase, catalytic domain 15 d1c6va_ 99.8 10 Fold:Ribonuclease H-like motif Superfamily:Ribonuclease H-like Family:Retroviral integrase, catalytic domain 16 c1rthA_ 99.7 16 PDB header:nucleotidyltransferase Chain: A: PDB Molecule:hiv-1 reverse transcriptase; PDBTitle: high resolution structures of hiv-1 rt from four rt-2 inhibitor complexes 17 c1mu2A_ 99.5 19 PDB header:transferase Chain: A: PDB Molecule:hiv-2 rt; PDBTitle: crystal structure of hiv-2 reverse transcriptase 18 d2zd1b1 99.3 16 Fold:DNA/RNA polymerases Superfamily:DNA/RNA polymerases Family:Reverse transcriptase 19 c2opqA_ 99.2 19 PDB header:transferase Chain: A: PDB Molecule:reverse transcriptase/ribonuclease h; PDBTitle: crystal structure of l100i mutant hiv-1 reverse2 transcriptase in complex with gw420867x. 20 c3kk1B_ 99.2 16 PDB header:transferase/dna Chain: B: PDB Molecule:reverse transcriptase p51 subunit; PDBTitle: hiv-1 reverse transcriptase-dna complex with nuceotide inhibitor gs-2 9148-diphosphate bound in nucleotide site 21 d1mu2a2 not modelled 99.1 17 Fold:DNA/RNA polymerases Superfamily:DNA/RNA polymerases Family:Reverse transcriptase 22 d1bcoa2 not modelled 99.0 14 Fold:Ribonuclease H-like motif Superfamily:Ribonuclease H-like Family:mu transposase, core domain 23 c1bcoA_ not modelled 98.7 14 PDB header:transposase Chain: A: PDB Molecule:bacteriophage mu transposase; PDBTitle: bacteriophage mu transposase core domain 24 d1ztwa1 not modelled 98.6 13 Fold:DNA/RNA polymerases Superfamily:DNA/RNA polymerases Family:Reverse transcriptase 25 d1hara_ not modelled 98.2 17 Fold:DNA/RNA polymerases Superfamily:DNA/RNA polymerases Family:Reverse transcriptase 26 c2ehgA_ not modelled 98.0 17 PDB header:hydrolase Chain: A: PDB Molecule:ribonuclease hi; PDBTitle: crystal structure of hyperthermophilic archaeal rnase hi 27 c3hstD_ not modelled 97.9 13 PDB header:hydrolase Chain: D: PDB Molecule:protein rv2228c/mt2287; PDBTitle: n-terminal rnase h domain of rv2228c from mycobacterium tuberculosis2 as a fusion protein with maltose binding protein 28 d1jl2a_ not modelled 97.9 21 Fold:Ribonuclease H-like motif Superfamily:Ribonuclease H-like Family:Ribonuclease H 29 d1rw3a_ not modelled 97.8 14 Fold:DNA/RNA polymerases Superfamily:DNA/RNA polymerases Family:Reverse transcriptase 30 c2qkkI_ not modelled 97.7 15 PDB header:hydrolase/dna/rna Chain: I: PDB Molecule:ribonuclease h1; PDBTitle: human rnase h catalytic domain mutant d210n in complex with2 14-mer rna/dna hybrid 31 c2kq2A_ not modelled 97.5 19 PDB header:hydrolase Chain: A: PDB Molecule:ribonuclease h-related protein; PDBTitle: solution nmr structure of the apo form of a ribonuclease h2 domain of protein dsy1790 from desulfitobacterium3 hafniense, northeast structural genomics target dhr1a 32 d1jlaa1 not modelled 97.5 13 Fold:Ribonuclease H-like motif Superfamily:Ribonuclease H-like Family:Ribonuclease H 33 c2hb5A_ not modelled 97.4 15 PDB header:hydrolase Chain: A: PDB Molecule:reverse transcriptase/ribonuclease h; PDBTitle: crystal structure of the moloney murine leukemia virus2 rnase h domain 34 d1s9ga1 not modelled 97.4 15 Fold:Ribonuclease H-like motif Superfamily:Ribonuclease H-like Family:Ribonuclease H 35 c3u3gA_ not modelled 97.4 16 PDB header:hydrolase Chain: A: PDB Molecule:ribonuclease h; PDBTitle: structure of lc11-rnase h1 isolated from compost by metagenomic2 approach: insight into the structural bases for unusual enzymatic3 properties of sto-rnase h1 36 c2e4lA_ not modelled 97.4 18 PDB header:hydrolase Chain: A: PDB Molecule:ribonuclease hi; PDBTitle: thermodynamic and structural analysis of thermolabile rnase hi from2 shewanella oneidensis mr-1 37 d1rila_ not modelled 97.4 16 Fold:Ribonuclease H-like motif Superfamily:Ribonuclease H-like Family:Ribonuclease H 38 d1s1ta1 not modelled 97.4 14 Fold:Ribonuclease H-like motif Superfamily:Ribonuclease H-like Family:Ribonuclease H 39 d1wsib_ not modelled 97.3 19 Fold:Ribonuclease H-like motif Superfamily:Ribonuclease H-like Family:Ribonuclease H 40 c3h08B_ not modelled 97.3 17 PDB header:hydrolase Chain: B: PDB Molecule:rnh (ribonuclease h); PDBTitle: crystal structure of the ribonuclease h1 from chlorobium2 tepidum 41 c3hosA_ not modelled 97.2 7 PDB header:transferase, dna binding protein/dna Chain: A: PDB Molecule:transposable element mariner, complete cds; PDBTitle: crystal structure of the mariner mos1 paired end complex with mg 42 d1jl1a_ not modelled 97.2 20 Fold:Ribonuclease H-like motif Superfamily:Ribonuclease H-like Family:Ribonuclease H 43 d1mu2a1 not modelled 97.2 15 Fold:Ribonuclease H-like motif Superfamily:Ribonuclease H-like Family:Ribonuclease H 44 d1eeta1 not modelled 97.0 13 Fold:Ribonuclease H-like motif Superfamily:Ribonuclease H-like Family:Ribonuclease H 45 d1o1wa_ not modelled 97.0 15 Fold:Ribonuclease H-like motif Superfamily:Ribonuclease H-like Family:Ribonuclease H 46 d1nh0a_ 95.7 14 Fold:Acid proteases Superfamily:Acid proteases Family:Retroviral protease (retropepsin) 47 d1bdqa_ 95.2 14 Fold:Acid proteases Superfamily:Acid proteases Family:Retroviral protease (retropepsin) 48 d1c6ya_ 94.6 12 Fold:Acid proteases Superfamily:Acid proteases Family:Retroviral protease (retropepsin) 49 d1siva_ 94.6 14 Fold:Acid proteases Superfamily:Acid proteases Family:Retroviral protease (retropepsin) 50 d3ecga1 94.1 16 Fold:Acid proteases Superfamily:Acid proteases Family:Retroviral protease (retropepsin) 51 d2nmza1 94.1 16 Fold:Acid proteases Superfamily:Acid proteases Family:Retroviral protease (retropepsin) 52 d1kzka_ not modelled 93.9 14 Fold:Acid proteases Superfamily:Acid proteases Family:Retroviral protease (retropepsin) 53 d1sgua_ not modelled 93.7 12 Fold:Acid proteases Superfamily:Acid proteases Family:Retroviral protease (retropepsin) 54 d1rpia_ not modelled 93.7 10 Fold:Acid proteases Superfamily:Acid proteases Family:Retroviral protease (retropepsin) 55 d1zbfa1 not modelled 93.1 15 Fold:Ribonuclease H-like motif Superfamily:Ribonuclease H-like Family:Ribonuclease H 56 d1hvca_ not modelled 92.7 19 Fold:Acid proteases Superfamily:Acid proteases Family:Retroviral protease (retropepsin) 57 c3nr6A_ not modelled 91.8 19 PDB header:hydrolase/inhibitor Chain: A: PDB Molecule:protease p14; PDBTitle: crystal structure of xenotropic murine leukemia virus-related virus2 (xmrv) protease 58 c2rpiA_ not modelled 88.3 24 PDB header:hydrolase Chain: A: PDB Molecule:ribonuclease h; PDBTitle: the nmr structure of the submillisecond folding2 intermediate of the thermus thermophilus ribonuclease h 59 d1az5a_ not modelled 86.1 16 Fold:Acid proteases Superfamily:Acid proteases Family:Retroviral protease (retropepsin) 60 d2fmba_ not modelled 86.0 12 Fold:Acid proteases Superfamily:Acid proteases Family:Retroviral protease (retropepsin) 61 d1nsoa_ not modelled 84.2 20 Fold:Acid proteases Superfamily:Acid proteases Family:Retroviral protease (retropepsin) 62 d4fiva_ not modelled 76.2 18 Fold:Acid proteases Superfamily:Acid proteases Family:Retroviral protease (retropepsin) 63 c3f2kB_ not modelled 75.7 5 PDB header:transferase Chain: B: PDB Molecule:histone-lysine n-methyltransferase setmar; PDBTitle: structure of the transposase domain of human histone-lysine2 n-methyltransferase setmar 64 c3s8iA_ not modelled 75.7 19 PDB header:hydrolase Chain: A: PDB Molecule:protein ddi1 homolog 1; PDBTitle: the retroviral-like protease (rvp) domain of human ddi1 65 d1sqha_ not modelled 50.8 7 Fold:Acyl-CoA N-acyltransferases (Nat) Superfamily:Acyl-CoA N-acyltransferases (Nat) Family:Hypothetical protein cg14615-pa 66 c2i1aC_ not modelled 48.7 17 PDB header:protein turnover Chain: C: PDB Molecule:dna damage-inducible protein ddi1; PDBTitle: a retroviral protease-like domain in the eukaryotic protein2 ddi1 67 c3lhrA_ not modelled 41.3 12 PDB header:transcription regulator Chain: A: PDB Molecule:zinc finger protein 24; PDBTitle: crystal structure of the scan domain from human znf24 68 d1dq3a2 not modelled 39.5 8 Fold:dsRBD-like Superfamily:YcfA/nrd intein domain Family:PI-Pfui intein middle domain 69 c2zf8A_ not modelled 26.4 18 PDB header:structural protein Chain: A: PDB Molecule:component of sodium-driven polar flagellar motor; PDBTitle: crystal structure of moty 70 c2csdB_ not modelled 25.6 3 PDB header:isomerase Chain: B: PDB Molecule:topoisomerase v; PDBTitle: crystal structure of topoisomerase v (61 kda fragment) 71 d2fi2a1 not modelled 23.5 10 Fold:Acyl carrier protein-like Superfamily:Retrovirus capsid dimerization domain-like Family:SCAN domain 72 d2d81a1 not modelled 23.0 17 Fold:alpha/beta-Hydrolases Superfamily:alpha/beta-Hydrolases Family:PHB depolymerase-like 73 c3dcgF_ not modelled 21.2 22 PDB header:ligase/viral protein Chain: F: PDB Molecule:virion infectivity factor; PDBTitle: crystal structure of the hiv vif bc-box in complex with human elonginb2 and elonginc 74 d1sska_ not modelled 21.2 25 Fold:Coronavirus RNA-binding domain Superfamily:Coronavirus RNA-binding domain Family:Coronavirus RNA-binding domain 75 c2de0X_ not modelled 20.8 15 PDB header:transferase Chain: X: PDB Molecule:alpha-(1,6)-fucosyltransferase; PDBTitle: crystal structure of human alpha 1,6-fucosyltransferase, fut8 76 c2b9kA_ not modelled 19.8 14 PDB header:antibiotic Chain: A: PDB Molecule:antimicrobial peptide lci; PDBTitle: solution structure of lci, an amp from bacillus subtilis 77 d2pt0a1 not modelled 19.8 14 Fold:(Phosphotyrosine protein) phosphatases II Superfamily:(Phosphotyrosine protein) phosphatases II Family:Myo-inositol hexaphosphate phosphohydrolase (phytase) PhyA 78 c2lezA_ not modelled 19.3 12 PDB header:signaling protein Chain: A: PDB Molecule:secreted effector protein pipb2; PDBTitle: solution nmr structure of n-terminal domain of salmonella effector2 protein pipb2. northeast structural genomics consortium (nesg) target3 stt318a 79 c2f7tA_ not modelled 18.4 8 PDB header:dna binding protein Chain: A: PDB Molecule:mos1 transposase; PDBTitle: crystal structure of the catalytic domain of mos1 mariner2 transposase 80 c2jeuA_ not modelled 18.3 26 PDB header:transcription Chain: A: PDB Molecule:regulatory protein e2; PDBTitle: transcription activator structure reveals redox control of2 a replication initiation reaction 81 c1tueG_ not modelled 17.5 16 PDB header:replication Chain: G: PDB Molecule:regulatory protein e2; PDBTitle: the x-ray structure of the papillomavirus helicase in2 complex with its molecular matchmaker e2 82 c2yc2D_ not modelled 17.4 10 PDB header:transport protein Chain: D: PDB Molecule:small rab-related gtpase; PDBTitle: intraflagellar transport complex 25-27 from chlamydomonas 83 c2l26A_ not modelled 17.0 9 PDB header:membrane protein Chain: A: PDB Molecule:uncharacterized protein rv0899/mt0922; PDBTitle: rv0899 from mycobacterium tuberculosis contains two separated domains 84 d1ecfa1 not modelled 16.8 22 Fold:PRTase-like Superfamily:PRTase-like Family:Phosphoribosyltransferases (PRTases) 85 d1xr7a_ not modelled 16.5 26 Fold:DNA/RNA polymerases Superfamily:DNA/RNA polymerases Family:RNA-dependent RNA-polymerase 86 d1wwia1 not modelled 15.0 9 Fold:Histone-fold Superfamily:Histone-fold Family:Bacterial histone-fold protein 87 d1qqha_ not modelled 15.0 18 Fold:E2 regulatory, transactivation domain Superfamily:E2 regulatory, transactivation domain Family:E2 regulatory, transactivation domain 88 d1raja_ not modelled 14.9 14 Fold:DNA/RNA polymerases Superfamily:DNA/RNA polymerases Family:RNA-dependent RNA-polymerase 89 c4e6sA_ not modelled 14.4 10 PDB header:transcription Chain: A: PDB Molecule:zinc finger and scan domain-containing protein 10; PDBTitle: crystal structure of the scan domain from mouse zfp206 90 d1gph11 not modelled 14.3 17 Fold:PRTase-like Superfamily:PRTase-like Family:Phosphoribosyltransferases (PRTases) 91 d1w79a1 not modelled 13.8 16 Fold:beta-lactamase/transpeptidase-like Superfamily:beta-lactamase/transpeptidase-like Family:Dac-like 92 d1xr6a_ not modelled 13.6 28 Fold:DNA/RNA polymerases Superfamily:DNA/RNA polymerases Family:RNA-dependent RNA-polymerase 93 c2kgwA_ not modelled 13.4 9 PDB header:membrane protein Chain: A: PDB Molecule:outer membrane protein a; PDBTitle: solution structure of the carboxy-terminal domain of ompatb, a pore2 forming protein from mycobacterium tuberculosis 94 d1vqoe2 not modelled 13.4 7 Fold:Ribosomal protein L6 Superfamily:Ribosomal protein L6 Family:Ribosomal protein L6 95 d1baia_ not modelled 13.3 18 Fold:Acid proteases Superfamily:Acid proteases Family:Retroviral protease (retropepsin) 96 c4acoA_ not modelled 13.3 23 PDB header:dna binding protein Chain: A: PDB Molecule:centromere dna-binding protein complex cbf3 subunit a; PDBTitle: structure of the budding yeast ndc10 n-terminal domain 97 c3du6A_ not modelled 13.3 23 PDB header:transferase Chain: A: PDB Molecule:telomerase reverse transcriptase; PDBTitle: structure of the catalytic subunit of telomerase, tert 98 c3n6mA_ not modelled 13.2 13 PDB header:transferase Chain: A: PDB Molecule:rna-dependent rna polymerase; PDBTitle: crystal structure of ev71 rdrp in complex with gtp 99 c1uv7A_ not modelled 13.1 26 PDB header:transport Chain: A: PDB Molecule:general secretion pathway protein m; PDBTitle: periplasmic domain of epsm from vibrio cholerae