Job Description O13535 Confidence 76.21% Date Mon Jul 2 19:10:10 BST 2012 Rank 62 Aligned Residues 80 % Identity 18% Template d4fiva_ SCOP info Acid proteases Acid proteases Retroviral protease (retropepsin) Resolution 1.80

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		497	.	.	500	.	.	.	.	.	.	.	.	.	510	.	.	.	.	.	.	.	.	.	520	.	.	.	.	.	.	.	.	.	530	.	.	.	.	.	.	.	.	.	540	.	.	.	.	.	.	.	.							.	550	.	.	.	.	.	.	.	.	.	560	.	.	.	.	.	.	.	.	.	570
Predicted Secondary structure																																																						.	.	.	.	.	.
Query SS confidence																																																						.	.	.	.	.	.
Query Sequence		L	L	D	S	G	A	S	R	T	L	I	R	S	A	H	H	I	H	S	A	S	S	N	P	D	I	N	V	V	D	A	Q	K	R	N	I	P	I	N	A	I	G	D	L	Q	F	H	F	Q	D	N	T	.	.	.	.	.	.	K	T	S	I	K	V	L	H	T	P	N	I	A	Y	D	L	L	S	L	N	E	L
Query Conservation																																																						.	.	.	.	.	.
Alig confidence																																																						.	.	.	.	.	.
Template Conservation
Template Sequence		L	L	D	T	G	A	D	I	T	I	L	N	R	R	D	F	Q	V	K	N	S	I	E	N	G	R	Q	N	M	I	G	V	G	G	G	K	R	G	T	N	Y	I	N	V	H	L	E	I	R	D	E	N	Y	K	T	Q	C	I	F	G	N	V	C	V	L	E	D	N	S	L	I	Q	P	L	L	G	R	D	N	M
Template Known Secondary structure					T	T		S	S					G	G	G				T	T												S	S																		T	T	S													T	T				S	S
Template Predicted Secondary structure
Template SS confidence
		28	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.
		571	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		A	A	V	D	I	T
Query Conservation
Alig confidence
Template Conservation
Template Sequence		I	K	F	N	I	R
Template Known Secondary structure				T	T
Template Predicted Secondary structure
Template SS confidence
		108	.	110	.	.	.

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions