Job Description O13535 Confidence 21.19% Date Mon Jul 2 19:10:10 BST 2012 Rank 74 Aligned Residues 91 % Identity 25% Template d1sska_ SCOP info Coronavirus RNA-binding domain Coronavirus RNA-binding domain Coronavirus RNA-binding domain Resolution UNK

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		7	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		S	N	Y	P	H	I	S	H	G	S	A	C	A	S	V	T	S	K	E	V	H	T	N	Q	D	P	L	D	V	S	A	S	K	I	Q	E	Y	D	K	A	S	T	K	A	N	S	Q	Q	T	T	T	P	A	S	S	A	V	P	E	N	L	H	H	A	S	P	Q	P	A	S	V	P	P	P	Q	N	G	P	Y	P
Query Conservation
Alig confidence																	.																	.	.	.										.	.	.	.	.	.	.										.	.	.	.	.	.	.
Template Conservation																	.																	.	.	.										.	.	.	.	.	.	.										.	.	.	.	.	.	.
Template Sequence		H	H	H	H	H	H	S	S	G	L	V	P	R	G	S	.	A	M	G	L	P	N	N	T	A	S	W	F	T	A	L	T	.	.	.	Q	H	G	K	E	E	L	R	F	.	.	.	.	.	.	.	P	R	G	Q	G	V	P	I	N	.	.	.	.	.	.	.	T	N	S	G	P	D	D	Q	I	G	Y	Y	R
Template Known Secondary structure				S	S			S	S			S					.				S		S	S		S		S	S					.	.	.			S	S	S					.	.	.	.	.	.	.		T	T			S				.	.	.	.	.	.	.	S	S	S		S	S
Template Predicted Secondary structure																	.																	.	.	.										.	.	.	.	.	.	.										.	.	.	.	.	.	.
Template SS confidence
		5	.	.	.	.	10	.	.	.	.	.	.	.	.	.		20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.				.	.	.	.	40	.	.	.	.								.	.	.	.	.	50	.	.	.								.	.	.	.	.	.	60	.	.	.	.	.	.
		87	.	.	90		.	.	.	.					.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.
Predicted Secondary structure						.					.	.	.	.
Query SS confidence						.					.	.	.	.
Query Sequence		Q	Q	C	M	.	M	T	Q	N	.	.	.	.	Q	A	N	P	S	G	W	S	F	Y	G	H	P	S	M	I	P	Y	T	P	Y	Q	M	S	P	M	Y	F	P	P	G	P	Q	S	Q	F	P
Query Conservation						.					.	.	.	.
Alig confidence						.					.	.	.	.											.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation																									.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence		R	A	T	R	R	V	R	G	G	D	G	K	M	K	E	L	S	P	R	W	Y	F	Y	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	Y	L	G	T	G	P	E	A	S	L	P
Template Known Secondary structure										T	T	T													.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.			S	S	S	S				S
Template Predicted Secondary structure																									.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
		67	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.																	90	.	.	.	.	.	.	.	.	.	100

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions