Job Description O13535 Confidence 97.76% Date Mon Jul 2 19:10:10 BST 2012 Rank 29 Aligned Residues 177 % Identity 14% Template d1rw3a_ SCOP info DNA/RNA polymerases DNA/RNA polymerases Reverse transcriptase Resolution 3.00

Show / Hide SS confidence

Show / Hide Conservation and Alignment quality

		1280	.	.	.	.	.	.	.	.	.	1290	.	.	.	.	.	.	.	.	.	1300	.	.	.	.	.	.	.	.	.	1310	.	.	.	.	.	.	.	.	.	1320	.	.	.	.	.	.	.	.	.	1330	.	.	.	.	.	.	.	.	.	1340	.	.	.	.	.	.	.	.	.	1350	.	.	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		K	D	I	K	E	K	E	K	Y	I	Q	A	Y	H	K	E	V	N	Q	L	L	M	M	K	T	W	D	T	D	R	Y	Y	D	R	K	E	I	D	P	K	R	V	I	N	S	M	F	I	F	N	R	K	R	D	G	T	H	K	A	R	F	V	A	R	G	D	I	Q	H	P	D	T	Y	D	P	G	M	Q	S	N
Query Conservation
Alig confidence																														.	.	.	.	.	.	.	.	.	.																			.							.	.	.	.	.	.	.	.	.
Template Conservation																														.	.	.	.	.	.	.	.	.	.																			.							.	.	.	.	.	.	.	.	.
Template Sequence		K	Q	Y	P	M	S	Q	E	A	R	L	G	I	K	P	H	I	Q	R	L	L	D	Q	G	I	L	V	P	.	.	.	.	.	.	.	.	.	.	C	Q	S	P	W	N	T	P	L	L	P	V	K	K	P	G	T	N	.	D	Y	R	P	V	Q	.	.	.	.	.	.	.	.	.	D	L	R	E	V	N	K	R
Template Known Secondary structure								T	T					S										T	T	S				.	.	.	.	.	.	.	.	.	.				S		B	B								S	S	S	S	.							.	.	.	.	.	.	.	.	.		T						T
Template Predicted Secondary structure																														.	.	.	.	.	.	.	.	.	.																			.							.	.	.	.	.	.	.	.	.
Template SS confidence
		62	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.											90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.		.	.	110	.	.	.										.	.	.	.	.	.	120	.
		1360	.					.	.	.	.	.	.	.	.	1370	.	.	.	.	.	.	.	.	.	1380	.	.	.	.	.	.	.	.	.	1390	.	.	.	.	.	.	.					.	.	1400	.	.	.	.	.	.	.	.	.	1410	.	.	.	.	.	.	.	.	.	1420	.	.	.	.	.	.	.	.	.	1430	.
Predicted Secondary structure				.	.	.	.																																					.	.	.	.
Query SS confidence				.	.	.	.																																					.	.	.	.
Query Sequence		T	V	.	.	.	.	H	H	Y	A	L	M	T	S	L	S	L	A	L	D	N	N	Y	Y	I	T	Q	L	D	I	S	S	A	Y	L	Y	A	D	I	K	E	E	.	.	.	.	L	Y	I	R	P	P	P	H	L	G	M	N	D	K	L	I	R	L	K	K	S	L	Y	G	L	K	Q	S	G	A	N	W	Y	E
Query Conservation				.	.	.	.																																					.	.	.	.
Alig confidence				.	.	.	.																																					.	.	.	.
Template Conservation
Template Sequence		V	E	D	I	H	P	T	V	P	N	P	Y	N	L	L	S	G	L	P	P	S	H	Q	W	Y	T	V	L	D	L	K	D	A	F	F	C	L	R	L	H	P	T	S	Q	P	L	F	A	F	E	W	R	D	P	E	M	G	I	S	G	Q	L	T	W	T	R	L	P	Q	G	F	K	N	S	P	T	L	F	D	E
Template Known Secondary structure		B															T	T			T	T									B	T	T	G	G	G	G	S	B	B		S	T	T	S	G	G	G						T	T	S	S	S								S	B			S	S		T	T
Template Predicted Secondary structure
Template SS confidence
		122	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.
		1432	.	.	.	.	.	.	.	1440	.	.	.	.	.	.	.	.	.	1450	.	.	.	.	.	.	.	.	.	1460	.	.	.	.	.	.	.	.	.	1470	.	.	.	.	.	.	.	.	.	1480	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		T	I	K	S	Y	L	I	K	Q	C	G	M	E	E	V	R	G	W	S	C	V	F	K	N	S	Q	V	T	I	C	L	F	V	D	D	M	I	L	F	S	K	D	L	N	A	N	K	K	I	I	T	T	L	K	K	Q
Query Conservation
Alig confidence								.			.	.	.	.	.	.	.	.	.	.
Template Conservation								.			.	.	.	.	.	.	.	.	.	.
Template Sequence		A	L	H	R	D	L	.	A	D	.	.	.	.	.	.	.	.	.	.	F	R	I	Q	H	P	D	L	I	L	L	Q	Y	V	D	D	L	L	L	A	A	T	S	E	L	D	C	Q	Q	G	T	R	A	L	L	Q	T
Template Known Secondary structure								.			.	.	.	.	.	.	.	.	.	.				T		T	T							T	T							S	S
Template Predicted Secondary structure								.			.	.	.	.	.	.	.	.	.	.
Template SS confidence
		202	.	.	.	.	.		.	.											210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.

No model constructed - rank, confidence too low

---

Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions