Job Description O13535 Confidence 98.25% Date Mon Jul 2 19:10:10 BST 2012 Rank 25 Aligned Residues 152 % Identity 17% Template d1hara_ SCOP info DNA/RNA polymerases DNA/RNA polymerases Reverse transcriptase Resolution 2.20

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		1289	1290	.	.	.	.	.	.	.	.	.	1300	.	.	.	.	.	.	.	.	.	1310	.	.	.	.	.	.	.	.	.	1320	.	.	.	.	.	.	.	.	.	1330	.	.	.	.	.	.	.	.	.	1340	.	.	.	.	.	.	.	.	.	1350	.	.	.	.	.	.	.	.	.	1360	.	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		I	Q	A	Y	H	K	E	V	N	Q	L	L	M	M	K	T	W	D	T	D	R	Y	Y	D	R	K	E	I	D	P	K	R	V	I	N	S	M	F	I	F	N	R	K	R	D	G	T	H	K	A	R	F	V	A	R	G	D	I	Q	H	P	D	T	Y	D	P	G	M	Q	S	N	T	V	H	H	Y	A	L	M	T
Query Conservation
Alig confidence																					.	.	.	.	.	.	.	.																			.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.													.	.	.	.	.	.
Template Conservation																					.	.	.	.	.	.	.	.																			.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.													.	.	.	.	.	.
Template Sequence		I	A	A	L	V	A	I	C	T	E	M	E	K	E	G	K	I	S	K	.	.	.	.	.	.	.	.	I	G	P	E	N	P	Y	N	T	P	V	F	A	I	W	A	K	L	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	V	D	F	R	E	L	N	K	R	T	Q	D	.	.	.	.	.	.
Template Known Secondary structure															T	T	S				.	.	.	.	.	.	.	.			T	T				B											.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.			T							B			.	.	.	.	.	.
Template Predicted Secondary structure																					.	.	.	.	.	.	.	.																			.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.													.	.	.	.	.	.
Template SS confidence
		31	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.									50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.																		.	.	70	.	.	.	.	.	.	.	.	.
		1369	1370	.	.	.	.	.	.	.	.	.	1380	.	.	.	.	.	.	.	.	.	1390	.	.	.	.	.	.	.						.	.	1400	.	.	.	.	.	.	.	.	.	1410	.	.	.	.	.	.	.	.	.	1420	.	.	.	.	.	.	.	.	.	1430	.	.	.	.	.	.	.	.	.	1440	.	.	.
Predicted Secondary structure																															.	.	.	.	.
Query SS confidence																															.	.	.	.	.
Query Sequence		S	L	S	L	A	L	D	N	N	Y	Y	I	T	Q	L	D	I	S	S	A	Y	L	Y	A	D	I	K	E	E	.	.	.	.	.	L	Y	I	R	P	P	P	H	L	G	M	N	D	K	L	I	R	L	K	K	S	L	Y	G	L	K	Q	S	G	A	N	W	Y	E	T	I	K	S	Y	L	I	K	Q	C	G	M
Query Conservation																															.	.	.	.	.
Alig confidence		.	.	.	.	.																									.	.	.	.	.																																									.			.	.	.
Template Conservation		.	.	.	.	.																																																																						.			.	.	.
Template Sequence		.	.	.	.	.	F	W	E	V	K	S	V	T	V	L	D	V	G	D	A	Y	F	S	V	P	L	D	E	D	F	R	K	Y	T	A	F	T	I	P	S	I	N	N	E	T	P	G	I	R	Y	Q	Y	N	V	L	P	Q	G	W	K	G	S	P	A	I	F	Q	S	S	M	T	K	I	L	.	A	P	.	.	.
Template Known Secondary structure		.	.	.	.	.													G	G	G	G	G	G	S	B			T	T	T	G	G	G	G							G	G	G		S								S	B			T	T		T	T														.			.	.	.
Template Predicted Secondary structure		.	.	.	.	.																																																																						.			.	.	.
Template SS confidence
							87	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.		.	.
		1444	.	.	.	.	.	1450	.	.	.	.	.	.	.	.	.	1460	.	.	.	.	.	.	.	.	.	1470	.	.		.	.	.	.					.	.	.	1480	.	.	.	.	.	.	.
Predicted Secondary structure																															.					.	.	.	.
Query SS confidence																															.					.	.	.	.
Query Sequence		E	E	V	R	G	W	S	C	V	F	K	N	S	Q	V	T	I	C	L	F	V	D	D	M	I	L	F	S	K	.	D	L	N	A	.	.	.	.	N	K	K	I	I	T	T	L	K	K	Q
Query Conservation																															.					.	.	.	.
Alig confidence		.	.	.	.	.	.	.																							.					.	.	.	.
Template Conservation		.	.	.	.	.	.	.
Template Sequence		.	.	.	.	.	.	.	F	K	A	A	N	P	D	I	V	I	Y	Q	Y	M	D	D	L	Y	V	G	S	D	L	A	I	G	A	H	R	T	K	I	E	E	L	R	Q	H	L	L	R	W
Template Known Secondary structure		.	.	.	.	.	.	.						T	T	S						T	T							S	S																			T
Template Predicted Secondary structure		.	.	.	.	.	.	.
Template SS confidence
									171	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions