Job Description O13535 Confidence 13.28% Date Mon Jul 2 19:10:10 BST 2012 Rank 95 Aligned Residues 78 % Identity 18% Template d1baia_ SCOP info Acid proteases Acid proteases Retroviral protease (retropepsin) Resolution 2.40

Show / Hide SS confidence

Show / Hide Conservation and Alignment quality

		497	.	.	500	.	.	.	.	.	.	.	.	.	510	.	.	.	.	.	.	.	.	.	520	.	.	.	.		.	.	.	.	.	530	.	.	.	.	.	.	.	.	.	540	.	.							.	.	.	.	.	.	.	550	.	.	.	.	.	.	.	.	.	560	.	.	.	.	.	.	.	.	.
Predicted Secondary structure																														.																			.	.	.	.	.	.
Query SS confidence																														.																			.	.	.	.	.	.
Query Sequence		L	L	D	S	G	A	S	R	T	L	I	R	S	A	H	H	I	H	S	A	S	S	N	P	D	I	N	V	.	V	D	A	Q	K	R	N	I	P	I	N	A	I	G	D	L	Q	F	.	.	.	.	.	.	H	F	Q	D	N	T	K	T	S	I	K	V	L	H	T	P	N	I	A	Y	D	L	L	S	L	N	E
Query Conservation																														.																			.	.	.	.	.	.
Alig confidence																														.																			.	.	.	.	.	.																	.
Template Conservation																																																																							.
Template Sequence		L	L	D	T	G	A	D	D	T	V	I	S	E	E	D	W	P	T	D	W	P	V	M	E	A	A	N	P	Q	I	H	G	I	G	G	G	I	P	V	R	K	S	R	D	M	I	E	L	G	V	I	N	R	D	G	S	L	E	R	P	L	L	L	F	P	L	V	A	M	.	T	P	V	N	I	L	G	R	D	C
Template Known Secondary structure					T	T		S	S					T	T	T	S		T	T	S													S	S									S	S									T	T	S		B													.		S	S
Template Predicted Secondary structure																																																																							.
Template SS confidence
		35	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.		.	.	.	.	.	.	110	.	.	.
		570	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		L	A	A	V	D	I
Query Conservation
Alig confidence
Template Conservation
Template Sequence		L	Q	G	L	G	L
Template Known Secondary structure					T	T
Template Predicted Secondary structure
Template SS confidence
		114	.	.	.	.	.

No model constructed - rank, confidence too low

---

Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions