Job Description O13535 Confidence 99.92% Date Mon Jul 2 19:10:10 BST 2012 Rank 10 Aligned Residues 140 % Identity 16% Template c3nf9A_ PDB info PDB header:hydrolase/hydrolase inhibitor Chain: A: PDB Molecule:integrase; PDBTitle: structural basis for a new mechanism of inhibition of hiv integrase2 identified by fragment screening and structure based design Resolution 1.95 Å

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		701	.	.	.	.	.	.	.	.	710	.	.	.	.	.	.	.	.	.	720	.	.	.	.	.	.	.	.	.	730	.	.	.	.	.	.	.	.	.	740	.	.	.	.	.	.	.	.	.	750	.	.	.	.	.	.	.	.	.	760	.	.	.	.	.	.	.	.	.	770	.	.	.	.	.	.	.	.	.	780
Predicted Secondary structure
Query SS confidence
Query Sequence		E	P	F	Q	Y	L	H	T	D	I	F	G	P	V	H	N	L	P	K	S	A	P	S	Y	F	I	S	F	T	D	E	T	T	K	F	R	W	V	Y	P	L	H	D	R	R	E	D	S	I	L	D	V	F	T	T	I	L	A	F	I	K	N	Q	F	Q	A	S	V	L	V	I	Q	M	D	R	G	S	E	Y	T
Query Conservation
Alig confidence					.										.	.	.	.	.	.	.																																						.	.	.	.					.	.
Template Conservation					.										.	.	.	.	.	.	.																																						.	.	.	.					.	.
Template Sequence		S	P	G	.	I	W	Q	L	D	C	T	H	L	.	.	.	.	.	.	.	E	G	K	V	I	L	V	A	V	H	V	A	S	G	Y	I	E	A	E	V	I	P	A	E	T	G	Q	E	T	A	Y	F	L	L	K	L	A	.	.	.	.	G	R	W	P	.	.	V	K	T	V	H	T	D	N	G	S	N	F	T
Template Known Secondary structure			T	T	.										.	.	.	.	.	.	.	T	T									T	T	T	T								S	S															.	.	.	.			S		.	.							S	S
Template Predicted Secondary structure					.										.	.	.	.	.	.	.																																						.	.	.	.					.	.
Template SS confidence
		57	.	.		60	.	.	.	.	.	.	.	.								.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.					.	.	.	.			110	.	.	.	.	.	.	.	.	.	120	.	.
		781	.	.	.	.	.	.	.	.	790	.	.	.	.	.	.	.	.	.	800	.	.	.	.	.	.	.	.	.	810	.	.	.	.	.	.	.	.	.	820	.	.	.	.	.	.	.	.	.	830	.	.	.	.	.	.	.	.	.	840	.	.	.	.	.	.	.	.	.	850	.	.	.	.	.	.	.	.	.	860
Predicted Secondary structure
Query SS confidence
Query Sequence		N	R	T	L	H	K	F	L	E	K	N	G	I	T	P	C	Y	T	T	T	A	D	S	R	A	H	G	V	A	E	R	L	N	R	T	L	L	D	D	C	R	T	Q	L	Q	C	S	G	L	P	N	H	L	W	F	S	A	I	E	F	S	T	I	V	R	N	S	L	A	S	P	K	S	K	K	S	A	R	Q	H
Query Conservation
Alig confidence																																																		.	.	.	.																			.	.	.
Template Conservation																																																		.	.	.	.																			.	.	.
Template Sequence		S	T	T	V	K	A	A	C	W	W	A	G	I	K	Q	E	D	G	I	P	Y	N	P	Q	S	Q	G	V	I	E	S	M	N	K	E	L	K	K	I	I	G	Q	V	R	D	Q	A	E	.	.	.	.	H	L	K	T	A	V	Q	M	A	V	F	I	H	N	H	K	R	K	.	.	.	G	Y	S	A	G	E	R
Template Known Secondary structure													T									S	S	T																					G	G	G		S	.	.	.	.	S																B		.	.	.			B
Template Predicted Secondary structure																																																		.	.	.	.																			.	.	.
Template SS confidence
		123	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170					.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.				.	190	.	.	.	.	.
		861
Predicted Secondary structure
Query SS confidence
Query Sequence		A
Query Conservation
Alig confidence
Template Conservation
Template Sequence		I
Template Known Secondary structure
Template Predicted Secondary structure
Template SS confidence
		200

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
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