Job Description O13535 Confidence 99.95% Date Mon Jul 2 19:10:10 BST 2012 Rank 7 Aligned Residues 179 % Identity 16% Template c3hpgC_ PDB info PDB header:transferase Chain: C: PDB Molecule:integrase; PDBTitle: visna virus integrase (residues 1-219) in complex with ledgf2 ibd: examples of open integrase dimer-dimer interfaces Resolution 3.28 Å

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		633	.	.	.	.	.	.	640	.	.	.	.	.	.	.	.	.	650	.	.	.							.	.	.	.	.	.	660	.	.	.	.	.	.	.	.	.	670	.	.	.	.	.	.	.	.	.	680	.	.	.	.	.	.	.	.	.	690	.	.	.	.	.	.	.	.	.	700	.	.	.	.	.	.
Predicted Secondary structure																							.	.	.	.	.	.
Query SS confidence																							.	.	.	.	.	.
Query Sequence		Y	P	F	I	H	R	M	L	A	H	A	N	A	Q	T	I	R	Y	S	L	K	.	.	.	.	.	.	N	N	T	I	T	Y	F	N	E	S	D	V	D	W	S	S	A	I	D	Y	Q	C	P	D	C	L	I	G	K	S	T	K	H	R	H	I	K	G	S	R	L	K	Y	Q	N	S	Y	E	P	F	Q	Y	L
Query Conservation																							.	.	.	.	.	.
Alig confidence										.													.	.	.	.	.	.						.	.	.	.	.	.	.	.	.	.	.	.	.	.	.										.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation										.																								.	.	.	.	.	.	.	.	.	.	.	.	.	.	.										.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence		A	E	E	E	H	N	K	W	.	H	Q	D	A	V	S	L	H	L	E	F	G	I	P	R	T	A	A	E	D	I	V	Q	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	Q	C	D	V	C	Q	E	N	K	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	M	I	D	H	W
Template Known Secondary structure										.																								.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	T						T			.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Predicted Secondary structure										.																								.	.	.	.	.	.	.	.	.	.	.	.	.	.	.										.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
		8	.	10	.	.	.	.	.		.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.																.	40	.	.	.	.	.	.	.																				.	.	50	.	.
		707	.	.	710	.	.	.	.	.	.	.	.	.	720	.	.	.	.	.	.	.	.	.	730	.	.	.	.	.	.	.	.	.	740	.	.	.	.	.	.	.	.	.	750	.	.	.	.	.	.	.	.	.	760	.	.	.	.	.	.	.	.	.	770	.	.	.	.	.	.	.	.	.	780	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		H	T	D	I	F	G	P	V	H	N	L	P	K	S	A	P	S	Y	F	I	S	F	T	D	E	T	T	K	F	R	W	V	Y	P	L	H	D	R	R	E	D	S	I	L	D	V	F	T	T	I	L	A	F	I	K	N	Q	F	Q	A	S	V	L	V	I	Q	M	D	R	G	S	E	Y	T	N	R	T	L	H	K
Query Conservation
Alig confidence									.	.	.	.	.	.	.																											.	.	.	.																.	.
Template Conservation									.	.	.	.	.	.	.																											.	.	.	.																.	.
Template Sequence		Q	V	D	Y	T	H	Y	.	.	.	.	.	.	.	E	D	K	I	I	L	V	W	V	E	T	N	S	G	L	I	Y	A	E	R	V	K	G	E	T	G	.	.	.	.	Q	E	F	R	V	Q	T	M	K	W	Y	A	M	F	A	.	.	P	K	S	L	Q	S	D	N	G	P	A	F	V	A	E	S	T	Q	L
Template Known Secondary structure									.	.	.	.	.	.	.	S	S									T	T	T									S					.	.	.	.														S		.	.		S						S
Template Predicted Secondary structure									.	.	.	.	.	.	.																											.	.	.	.																.	.
Template SS confidence
		64	.	.	.	.	.	70								.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.					.	.	.	100	.	.	.	.	.	.	.	.	.	110	.			.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130
		787	.	.	790	.	.	.	.	.	.	.	.	.	800	.	.	.	.	.	.	.	.	.	810	.	.	.	.	.	.	.	.	.	820	.	.	.	.	.	.	.	.	.	830	.	.	.	.	.	.	.	.	.	840	.	.	.	.	.	.	.	.	.	850	.	.	.	.	.	.	.	.	.	860	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		F	L	E	K	N	G	I	T	P	C	Y	T	T	T	A	D	S	R	A	H	G	V	A	E	R	L	N	R	T	L	L	D	D	C	R	T	Q	L	Q	C	S	G	L	P	N	H	L	W	F	S	A	I	E	F	S	T	I	V	R	N	S	L	A	S	P	K	S	K	K	S	A	R	Q	H	A	G	L
Query Conservation
Alig confidence																																												.	.	.	.
Template Conservation																																												.	.	.	.
Template Sequence		L	M	K	Y	L	G	I	E	H	T	T	G	I	P	W	N	P	Q	S	Q	A	L	V	E	R	T	H	Q	T	L	K	N	T	L	E	K	L	I	P	M	F	N	.	.	.	.	A	F	E	S	A	L	A	G	T	L	I	T	L	N	I	K	R	K	G	G	L	G	T	S	P	M	D	I	F	I	F
Template Known Secondary structure							T						S	S				T	T																				G	G	G		S	.	.	.	.	S														T	T			B	T	T	T	B
Template Predicted Secondary structure																																												.	.	.	.
Template SS confidence
		131	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.					.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.

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Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
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