Job Description O13535 Confidence 100.00% Date Mon Jul 2 19:10:10 BST 2012 Rank 1 Aligned Residues 205 % Identity 20% Template c1c0mA_ PDB info PDB header:transferase Chain: A: PDB Molecule:protein (integrase); PDBTitle: crystal structure of rsv two-domain integrase Resolution 2.53 Å

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		697	.	.	700	.	.	.	.	.	.	.	.	.	710	.	.	.	.	.	.	.	.	.	720	.	.	.	.	.	.	.	.	.	730	.	.	.	.	.	.	.	.	.	740	.	.	.	.	.	.	.	.	.	750	.	.	.	.	.	.	.	.	.	760	.	.	.	.	.	.	.	.	.	770	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		Q	N	S	Y	E	P	F	Q	Y	L	H	T	D	I	F	G	P	V	H	N	L	P	K	S	A	P	S	Y	F	I	S	F	T	D	E	T	T	K	F	R	W	V	Y	P	L	H	D	R	R	E	D	S	I	L	D	V	F	T	T	I	L	A	F	I	K	N	Q	F	Q	A	S	V	L	V	I	Q	M	D	R	G
Query Conservation
Alig confidence																		.	.	.																																														.	.	.	.	.
Template Conservation																		.	.	.																																														.	.	.	.	.
Template Sequence		P	R	G	L	G	P	L	Q	I	W	Q	T	D	F	T	L	.	.	.	E	P	R	M	A	P	R	S	W	L	A	V	T	V	D	T	A	S	S	A	I	V	V	T	Q	H	G	R	V	T	S	V	A	V	Q	H	H	W	A	T	A	I	A	V	L	.	.	.	.	.	G	R	P	K	A	I	K	T	D	N	G
Template Known Secondary structure		S			S	S	T	T	S									.	.	.		G	G	G		S	S									T	T	T									S	S																		.	.	.	.	.				S						S
Template Predicted Secondary structure																		.	.	.																																														.	.	.	.	.
Template SS confidence
		52	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.				.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.						.	.	.	.	.	.	.	120	.	.	.
		777	.	.	780	.	.	.	.	.	.	.	.	.	790	.	.	.	.	.	.	.	.	.	800	.	.	.	.	.	.	.	.	.	810	.	.	.	.	.	.	.	.	.	820	.	.	.	.	.	.	.	.					.	830	.	.	.	.	.	.	.	.	.	840	.	.	.	.	.	.	.	.	.	850	.	.
Predicted Secondary structure																																																						.	.	.	.
Query SS confidence																																																						.	.	.	.
Query Sequence		S	E	Y	T	N	R	T	L	H	K	F	L	E	K	N	G	I	T	P	C	Y	T	T	T	A	D	S	R	A	H	G	V	A	E	R	L	N	R	T	L	L	D	D	C	R	T	Q	L	Q	C	S	G	.	.	.	.	L	P	N	H	L	W	F	S	A	I	E	F	S	T	I	V	R	N	S	L	A	S	P	K
Query Conservation																																																						.	.	.	.
Alig confidence																																																						.	.	.	.
Template Conservation
Template Sequence		S	C	F	T	S	K	S	T	R	E	W	L	A	R	W	G	I	A	H	T	T	G	I	P	G	N	S	Q	G	Q	A	M	V	E	R	A	N	R	L	L	K	D	R	I	R	V	L	A	E	G	D	G	F	M	K	R	I	P	T	S	K	Q	G	E	L	L	A	K	A	M	Y	A	L	N	H	K	E	R	G	E
Template Known Secondary structure						S											T								S	S	S	S	T	T	S																					T	T		S	S	S			G	G	G														S	S			S	S
Template Predicted Secondary structure
Template SS confidence
		124	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.
		853	.	.	.	.	.	.	860	.	.	.	.	.	.	.	.	.	870	.	.	.	.	.	.	.	.	.	880	.	.	.	.	.	.					.	.	.	890	.	.	.	.	.	.	.	.	.	900	.	.	.	.	.	.	.	.	.	910	.	.	.	.	.	.
Predicted Secondary structure																																				.	.	.	.
Query SS confidence																																				.	.	.	.
Query Sequence		S	K	K	S	A	R	Q	H	A	G	L	A	G	L	D	I	S	T	L	L	P	F	G	Q	P	V	I	V	N	D	H	N	P	N	.	.	.	.	S	K	I	H	P	R	G	I	P	G	Y	A	L	H	P	S	R	N	S	Y	G	Y	I	I	Y	L	P	S	L	K
Query Conservation																																				.	.	.	.
Alig confidence																			.	.	.	.	.													.	.	.	.									.														.
Template Conservation																			.	.	.	.	.																									.														.
Template Sequence		N	T	K	T	P	I	Q	K	H	W	R	P	T	V	L	T	E	.	.	.	.	.	G	P	P	V	K	I	R	I	E	T	G	E	W	E	K	G	W	N	V	L	V	W	G	R	.	G	Y	A	A	V	K	N	R	D	T	D	K	V	.	I	W	V	P	S	R	K
Template Known Secondary structure			S	S								S					S	S	.	.	.	.	.									T	T	S													S	.	S							T	T	T				.					G	G	G
Template Predicted Secondary structure																			.	.	.	.	.																									.														.
Template SS confidence
		204	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220						.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.		.	.	.	.	.	250	.	.	.	.	.	.	.		.	.	260	.	.	.	.

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
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