Job Description O13535 Confidence 98.69% Date Mon Jul 2 19:10:10 BST 2012 Rank 23 Aligned Residues 155 % Identity 14% Template c1bcoA_ PDB info PDB header:transposase Chain: A: PDB Molecule:bacteriophage mu transposase; PDBTitle: bacteriophage mu transposase core domain Resolution 2.40 Å

Show / Hide SS confidence

Show / Hide Conservation and Alignment quality

		701	.	.	.	.	.	.	.	.	710	.	.		.	.	.	.	.	.	.	720	.	.				.	.	.	.	.	.	.	730	.	.	.	.	.	.	.	.	.	740	.	.	.	.	.	.	.	.	.	750	.	.	.	.	.	.	.	.	.	760	.	.	.	.	.	.	.	.	.	770	.	.	.	.	.	.
Predicted Secondary structure														.											.	.	.
Query SS confidence														.											.	.	.
Query Sequence		E	P	F	Q	Y	L	H	T	D	I	F	G	.	P	V	H	N	L	P	K	S	A	P	.	.	.	S	Y	F	I	S	F	T	D	E	T	T	K	F	R	W	V	Y	P	L	H	D	R	R	E	D	S	I	L	D	V	F	T	T	I	L	A	F	I	K	N	Q	F	Q	A	S	V	L	V	I	Q	M	D	R	G
Query Conservation														.											.	.	.
Alig confidence														.											.	.	.																										.	.
Template Conservation																																																					.	.
Template Sequence		D	A	M	Q	W	I	N	G	D	G	Y	L	H	N	V	F	V	R	W	F	N	G	D	V	I	R	P	K	T	W	F	W	Q	D	V	K	T	R	K	I	L	G	W	R	C	D	V	S	E	N	I	.	.	D	S	I	R	L	S	F	M	D	V	V	T	R	Y	G	I	P	E	D	F	H	I	T	I	D	N	T
Template Known Secondary structure			T	T	T										S	B					T	T	S													T	T	T										S	S				.	.																		S	S								T
Template Predicted Secondary structure																																																					.	.
Template SS confidence
		261	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.			.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.
		777	.	.	780	.																		.	.	.	.	.	.	.	.	790	.	.	.	.	.	.	.	.	.	800	.	.	.	.	.	.	.				.	.	810	.	.	.	.	.	.	.	.	.	820	.	.	.	.	.	.	.	.	.	830
Predicted Secondary structure							.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																											.	.	.																								.	.	.	.	.	.
Query SS confidence							.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																											.	.	.																								.	.	.	.	.	.
Query Sequence		S	E	Y	T	N	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	R	T	L	H	K	F	L	E	K	N	G	I	T	P	C	Y	T	T	T	A	D	S	R	A	H	G	.	.	.	V	A	E	R	L	N	R	T	L	L	D	D	C	R	T	Q	L	Q	C	S	G	L	P	.	.	.	.	.	.
Query Conservation							.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																											.	.	.																								.	.	.	.	.	.
Alig confidence							.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																											.	.	.													.	.	.	.								.	.	.	.	.	.
Template Conservation																																																																	.	.	.	.
Template Sequence		R	G	A	A	N	K	W	L	T	G	G	A	P	N	R	Y	R	F	K	V	K	E	D	D	P	K	G	L	F	L	L	M	G	A	K	M	H	W	T	S	V	V	A	G	K	G	W	G	Q	A	K	P	V	E	R	A	F	G	V	G	G	L	E	.	.	.	.	E	Y	V	D	K	H	P	A	L	A	G	A	Y
Template Known Secondary structure		T	S	T	T	T	T	T	T	S				T	T	T	T	B	S		B													T						S	S	S		T	T						S	S		S	S	G	G	G	S	G	G	G	G	G	.	.	.	.	G	T	T	T	T		G	G	G	T	T	T	B
Template Predicted Secondary structure																																																																	.	.	.	.
Template SS confidence
		339	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.	.	.	.	.	.	.	400	.					.	.	.	.	.	.	.	.	410	.	.	.	.
																	831	.	.	.	.	.	.	.	.	840	.	.	.	.	.	.	.	.	.	850	.	.	.	.	.	.	.	.	.	860	.
Predicted Secondary structure		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	N	H	L	W	F	S	A	I	E	F	S	T	I	V	R	N	S	L	A	S	P	K	S	K	K	S	A	R	Q	H	A
Query Conservation		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation
Template Sequence		T	G	P	Y	G	D	R	A	V	D	A	E	L	F	L	K	T	L	A	E	G	V	A	M	F	N	A	R	T	G	R	E	T	E	M	C	G	G	K	L	S	F	D	D	V	F
Template Known Secondary structure						T	T	T																										S	T	T	T	T	T	T
Template Predicted Secondary structure
Template SS confidence
		415	.	.	.	.	420	.	.	.	.	.	.	.	.	.	430	.	.	.	.	.	.	.	.	.	440	.	.	.	.	.	.	.	.	.	450	.	.	.	.	.	.	.	.	.	460

No model constructed - rank, confidence too low

---

Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions