Job Description P38822 Confidence 99.93% Date Mon Jul 2 19:20:36 BST 2012 Rank 15 Aligned Residues 263 % Identity 16% Template c3hahA_ PDB info PDB header:endocytosis Chain: A: PDB Molecule:human pacsin1 f-bar; PDBTitle: crystal structure of human pacsin1 f-bar domain (c2 lattice) Resolution 2.77 Å

Show / Hide SS confidence

Show / Hide Conservation and Alignment quality

		6	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		S	I	G	N	E	I	K	D	S	F	K	E	T	H	K	W	V	Q	N	N	L	K	W	L	K	D	I	E	Q	F	Y	R	E	R	A	K	L	E	K	D	Y	S	E	R	L	S	R	L	S	A	E	Y	F	N	K	K	S	S	T	S	V	P	I	S	V	G	D	T	P	T	T	T	P	G	S	I	E	A	A	G
Query Conservation
Alig confidence							.	.																																																.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation							.	.																																																.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence		S	F	W	E	V	.	.	G	N	Y	K	R	T	V	K	R	I	D	D	G	H	R	L	C	N	D	L	M	N	C	V	Q	E	R	A	K	I	E	K	A	Y	G	Q	Q	L	T	D	W	A	K	R	W	R	Q	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	L	I	E	K	G	P	Q	Y	G	S	L
Template Known Secondary structure		S	T	T	S	T	.	.	T	T	T																																													.	.	.	.	.	.	.	.	.	.	.	.	.	.	.					S	S
Template Predicted Secondary structure							.	.																																																.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
		18	.	20	.	.			.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.																70	.	.	.	.	.	.	.	.	.	80
		86	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		V	V	A	W	N	E	I	L	S	Q	T	D	M	I	S	K	D	H	D	Q	L	S	T	D	F	E	N	H	V	A	N	Q	L	S	G	L	F	T	K	L	D	M	T	L	S	K	I	N	G	F	N	N	D	M	V	N	K	K	D	N	I	Y	H	E	L	E	K	A	K	K	D	Y	D	E	A	C	S	T	M	E
Query Conservation
Alig confidence																																																.	.	.	.	.	.
Template Conservation																																																.	.	.	.	.	.
Template Sequence		E	R	A	W	G	A	I	M	T	E	A	D	K	V	S	E	L	H	Q	E	V	K	N	N	L	L	N	E	D	L	E	K	V	K	N	W	Q	K	D	A	Y	H	K	Q	I	M	.	.	.	.	.	.	G	G	F	K	E	T	K	E	A	E	D	G	F	R	K	A	Q	K	P	W	A	K	K	M	K	E	L	E
Template Known Secondary structure																													T															B		T	T	.	.	.	.	.	.	S	S	B
Template Predicted Secondary structure																																																.	.	.	.	.	.
Template SS confidence
		81	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.							.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.
		166	.	.	.	170	.	.	.	.				.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.
Predicted Secondary structure											.	.	.
Query SS confidence											.	.	.
Query Sequence		M	A	R	N	R	Y	T	K	A	.	.	.	S	N	D	R	N	K	K	K	L	D	E	K	E	M	E	M	N	K	C	K	N	E	Y	L	I	K	I	N	Q	A	N	R	T	K	D	K	Y	Y	F	Q	D	V	P	E	V	L	D	L	L	Q	D	V	N	E	A	K	T	L	F	L	N	D	L	W	L	K	A	A
Query Conservation											.	.	.
Alig confidence											.	.	.																																					.
Template Conservation																																																		.
Template Sequence		A	A	K	K	A	Y	H	L	A	C	K	E	E	K	L	A	M	Q	D	K	V	D	K	C	K	Q	D	V	Q	K	T	Q	E	K	Y	E	K	V	L	E	D	V	G	K	T	T	P	Q	.	Y	M	E	N	M	E	Q	V	F	E	Q	C	Q	Q	F	E	E	K	R	L	V	F	L	K	E	V	L	L	D	I	K
Template Known Secondary structure																																																		.
Template Predicted Secondary structure																																																		.
Template SS confidence
		155	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.		.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.
		243	.	.		.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.
Predicted Secondary structure					.
Query SS confidence					.
Query Sequence		S	V	E	.	N	D	L	G	A	N	V	S	K	R	L	Q	A	A	N	S	V	V	K	Q	N	K	P	S	L	N	T	A	I	F	I	K	H	N	L	K	N	W	K	E	P	Q	D	F	V	Y	K	P
Query Conservation					.
Alig confidence					.																																												.
Template Conservation																																																	.
Template Sequence		R	H	L	N	L	A	E	N	S	S	Y	I	H	V	Y	R	E	L	E	Q	A	I	R	G	A	D	A	Q	E	D	L	R	W	F	R	S	T	S	G	P	G	M	P	M	N	W	P	.	Q	F	E	E
Template Known Secondary structure						G	G	G	S	T	T	T												T	T															S	T	T	S						.
Template Predicted Secondary structure																																																	.
Template SS confidence
		254	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300		.	.	.	.

---

Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions