Job Description P38822 Confidence 35.99% Date Mon Jul 2 19:20:36 BST 2012 Rank 281 Aligned Residues 196 % Identity 9% Template c2rajA_ PDB info PDB header:structural protein Chain: A: PDB Molecule:sorting nexin-9; PDBTitle: so4 bound px-bar membrane remodeling unit of sorting nexin 9 Resolution 2.45 Å

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		22	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.
Predicted Secondary structure
Query SS confidence
Query Sequence		V	Q	N	N	L	K	W	L	K	D	I	E	Q	F	Y	R	E	R	A	K	L	E	K	D	Y	S	E	R	L	S	R	L	S	A	E	Y	F	N	K	K	S	S	T	S	V	P	I	S	V	G	D	T	P	T	T	T	P	G	S	I	E	A	A	G	V	V	A	W	N	E	I	L	S	Q	T	D	M	I	S	K
Query Conservation
Alig confidence																																								.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation																																								.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence		L	V	E	I	E	Q	K	C	E	A	V	G	K	F	T	K	A	M	D	D	G	V	K	E	L	L	T	V	G	Q	E	H	W	K	R	C	T	G	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	P	L	P	K	E	Y	Q	K	I	G	K	A	L	Q	S	L	A	T
Template Known Secondary structure																																						T	T	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Predicted Secondary structure																																								.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
		392	.	.	.	.	.	.	.	400	.	.	.	.	.	.	.	.	.	410	.	.	.	.	.	.	.	.	.	420	.	.	.	.	.	.	.	.	.																									430	.	.	.	.	.	.	.	.	.	440	.	.	.	.	.	.	.
		102	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.						.	.
Predicted Secondary structure																																																																											.	.	.	.	.
Query SS confidence																																																																											.	.	.	.	.
Query Sequence		D	H	D	Q	L	S	T	D	F	E	N	H	V	A	N	Q	L	S	G	L	F	T	K	L	D	M	T	L	S	K	I	N	G	F	N	N	D	M	V	N	K	K	D	N	I	Y	H	E	L	E	K	A	K	K	D	Y	D	E	A	C	S	T	M	E	M	A	R	N	R	Y	T	K	A	.	.	.	.	.	S	N
Query Conservation																																																																											.	.	.	.	.
Alig confidence																																																																											.	.	.	.	.
Template Conservation
Template Sequence		V	F	S	S	S	G	Y	Q	G	E	T	D	L	N	D	A	I	T	E	A	G	K	T	Y	E	E	I	A	S	L	V	A	E	Q	P	K	K	D	L	H	F	L	M	E	C	N	H	E	Y	K	G	F	L	G	C	F	P	D	I	I	G	T	H	K	G	A	I	E	K	V	K	E	S	D	K	L	V	A	T	S
Template Known Secondary structure					T	S			S	S																								T	S	T	T	T	T																T	T																T	T							T	T
Template Predicted Secondary structure
Template SS confidence
		448	.	450	.	.	.	.	.	.	.	.	.	460	.	.	.	.	.	.	.	.	.	470	.	.	.	.	.	.	.	.	.	480	.	.	.	.	.	.	.	.	.	490	.	.	.	.	.	.	.	.	.	500	.	.	.	.	.	.	.	.	.	510	.	.	.	.	.	.	.	.	.	520	.	.	.	.	.	.	.
		177	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.
Predicted Secondary structure
Query SS confidence
Query Sequence		D	R	N	K	K	K	L	D	E	K	E	M	E	M	N	K	C	K	N	E	Y	L	I	K	I	N	Q	A	N	R	T	K	D	K	Y	Y	F	Q	D	V	P	E	V	L	D	L	L	Q	D	V	N	E	A	K	T	L	F	L	N	D	L	W	L	K	A
Query Conservation
Alig confidence
Template Conservation
Template Sequence		K	I	T	L	Q	D	K	Q	N	M	V	K	R	V	S	I	M	S	Y	A	L	Q	A	E	M	N	H	F	H	S	N	R	I	Y	D	Y	N	S	V	I	R	L	Y	L	E	Q	Q	V	Q	F	Y	E	T	I	A	E	K	L	R	Q	A	L	S	R	F
Template Known Secondary structure		S	S																																																													T	T	S
Template Predicted Secondary structure
Template SS confidence
		528	.	530	.	.	.	.	.	.	.	.	.	540	.	.	.	.	.	.	.	.	.	550	.	.	.	.	.	.	.	.	.	560	.	.	.	.	.	.	.	.	.	570	.	.	.	.	.	.	.	.	.	580	.	.	.	.	.	.	.	.	.	590	.	.

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions