Return to main results Retrieve Phyre Job Id

Job DescriptionP38822
Confidence99.94%DateMon Jul 2 19:20:36 BST 2012
Rank12Aligned Residues125
% Identity23%Templatec1ng2A_
PDB info PDB header:oxidoreductase activatorChain: A: PDB Molecule:neutrophil cytosolic factor 1; PDBTitle: structure of autoinhibited p47phox
Resolution1.70 Å

  Insertion relative to template
  Deletion relative to template
  Catalytic residue from the CSA
 
Detailed help on interpreting your alignment


   494.....500.........510.........520.........530.........540.........550.........560.........570...
Predicted Secondary structure 
































































Query SS confidence 















































































Query Sequence  DDGKNKVLYAYVQKDDDEITITPGDKISLVARDTGSGWTKINNDTTGETGLVPTTYIRISSAATVKANDRGPAPEVPPPR
Query Conservation        
     
    


   
  
 
        
        
  
  
  
                        
Alig confidence 

































.





..
























...........
Template Conservation        




      


   

 
 

    . 


 
..   
  
  
  

           ........... 
Template Sequence  ILQTYRAIADYEKTSGSEMALSTGDVVEVVEKSE. SGWWFC. . QMKAKRGWIPASFLEPLDSPDETED. . . . . . . . . . . P
Template Known Secondary structure 


SS
B

SSTT


B
TT


T.TS

..







GGG


SS
SS
S

...........
Template Predicted Secondary structure 















.

..

















...........
Template SS confidence 















































































   157..160.........170.........180.........190 ...... ...200.........210.........220. .
 
   574.....580.........590.........600.........610.........620.........630...
Predicted Secondary structure 


































Query SS confidence 



























































Query Sequence  RSTLPVRTMEAIYAYEAQGDDEISIDPGDIITVIRGDDGSGWTYGECDGLKGLFPTSYCK
Query Conservation            


 
 
    



  

 
 
      



 

  
  



 


 
Alig confidence 





































.




















Template Conservation                  
    


   
  
 
     .  
      
  
 

  

 
Template Sequence  EPNYAGEPYVAIKAYTAVEGDEVSLLEGEAVEVIHKLL. DGWWVIRKDDVTGYFPSMYLQ
Template Known Secondary structure 


TT
SS
B


STTB

B
TT


T.TSTTGGG
Template Predicted Secondary structure 




























.



Template SS confidence 



























































   223......230.........240.........250.........260 .........270.........280.
 
Download:Text version FASTA pairwise alignment 3D Model in PDB format

View in Jmol

Send structure to FirstGlance for more viewing options


Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
 
© Structural Bioinformatics Group, Imperial College, London
Lawrence Kelley, Benjamin Jefferys 
Disclaimer
Terms and Conditions