Job Description P38822 Confidence 46.46% Date Mon Jul 2 19:20:36 BST 2012 Rank 273 Aligned Residues 172 % Identity 6% Template c1av1B_ PDB info PDB header:lipid transport Chain: B: PDB Molecule:apolipoprotein a-i; PDBTitle: crystal structure of human apolipoprotein a-i Resolution 4.00 Å

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		85	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.		.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.
Predicted Secondary structure																																																													.
Query SS confidence																																																													.
Query Sequence		G	V	V	A	W	N	E	I	L	S	Q	T	D	M	I	S	K	D	H	D	Q	L	S	T	D	F	E	N	H	V	A	N	Q	L	S	G	L	F	T	K	L	D	M	T	L	S	K	I	N	G	F	N	N	D	M	V	N	K	K	.	D	N	I	Y	H	E	L	E	K	A	K	K	D	Y	D	E	A	C	S	T
Query Conservation																																																													.
Alig confidence																																																													.
Template Conservation
Template Sequence		L	L	D	N	W	D	S	V	T	S	T	F	S	K	L	R	E	Q	L	G	P	V	T	Q	E	F	W	D	N	L	E	K	E	T	E	G	L	R	Q	E	M	S	K	D	L	E	E	V	K	A	K	V	Q	P	Y	L	D	D	F	Q	K	K	W	Q	E	E	M	E	L	Y	R	Q	K	V	E	P	L	R	A	E
Template Known Secondary structure		G	G	G							T	T								T	T																																																					T	T
Template Predicted Secondary structure
Template SS confidence
		46	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.
		164	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		M	E	M	A	R	N	R	Y	T	K	A	S	N	D	R	N	K	K	K	L	D	E	K	E	M	E	M	N	K	C	K	N	E	Y	L	I	K	I	N	Q	A	N	R	T	K	D	K	Y	Y	F	Q	D	V	P	E	V	L	D	L	L	Q	D	V	N	E	A	K	T	L	F	L	N	D	L	W	L	K	A	A	S
Query Conservation
Alig confidence
Template Conservation
Template Sequence		L	Q	E	G	A	R	Q	K	L	H	E	L	Q	E	K	L	S	P	L	G	E	E	M	R	D	R	A	R	A	H	V	D	A	L	R	T	H	L	A	P	Y	S	D	E	L	R	Q	R	L	A	A	R	L	E	A	L	K	E	N	G	G	A	R	L	A	E	Y	H	A	K	A	T	E	H	L	S	T	L	S	E
Template Known Secondary structure																		T	T																																																											T	T	T	T
Template Predicted Secondary structure
Template SS confidence
		126	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.
		244	.	.	.	.	.	250	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		V	E	N	D	L	G	A	N	V	S	K	R	L
Query Conservation
Alig confidence
Template Conservation
Template Sequence		K	A	K	P	A	L	E	D	L	R	Q	G	L
Template Known Secondary structure		S	S
Template Predicted Secondary structure
Template SS confidence
		206	.	.	.	210	.	.	.	.	.	.	.	.

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions