 |
| Job Description | P00044 | | Confidence | 99.50% | Date | Mon Jul 2 19:10:25 BST 2012 |
| Rank | 42 | Aligned Residues | 92 |
| % Identity | 16% | Template | d1mz4a_ |
| SCOP info | Cytochrome c
| Cytochrome c
| monodomain cytochrome c
|
| Resolution | 1.80 |
|
 |
|   |   |
2 | . | . | . | . | . | . | . | 10 | . | . | . | . | . | . | . | . | . | 20 | . | . | . | . | . | . | . | . | . | 30 | . | . | . | . | . | . | . | . | . | 40 | . | . | . | . | . | . | . | . | . | 50 | . | . | . | . | . | . | . | . | . | 60 | . | . | . | . | . | . | . | . | . | 70 | . | . | . | . | . | . | . | . | |
|
|
| Predicted Secondary structure |   |
|
|
|
|
|
|
|  |  |  |  |  |  |  |  |  |  |  |
|  |  |  |  |
|
|
|
|
|
|
|
|
|
|
|
|
|  |  |  |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|  |  |  |  |  |
|
|
|
|
|
|  |  |  |  |  |  |  |  |  |
|  |  | . | . | . |
| Query SS confidence |   |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| . |
. |
. |
| Query Sequence |   |
T | E | F | K | A | G | S | A | K | K | G | A | T | L | F | K | T | R | C | L | Q | C | H | T | V | E | K | G | G | P | H | K | V | G | P | N | L | H | G | I | F | G | R | H | S | G | Q | A | E | G | Y | S | Y | T | D | A | N | I | K | K | N | V | L | W | D | E | N | N | M | S | E | Y | L | T | N | P | K | . |
. |
. |
| Query Conservation |   |
  |   |   |   |   |
|
|   |   |   |
|   |   |
|
|   |   |   |
|   |   |
|
|   |   |   |   |   |
|   |   |   |   |
|
|   |
|   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |
|   |   |   |   |   |   |
|   | . | . | . |
| Alig confidence |   |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| . | . | . |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| . | . | . | . | . | . | . | . | . | . | . | . |
|
|
|
|
|
|
|
|
|
|
|
|
|
| . | . | . |
| Template Conservation |   |
  |   |   |   |   |   |   |
|   |   |
|
|   |
|
|   |   |   |
|
|   |
|
|
|   |   |
|   |
| . | . | . |   |
|
|   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   | . | . | . | . | . | . | . | . | . | . | . | . |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |
| Template Sequence |   |
I | T | L | T | E | K | Q | Y | L | E | G | K | R | L | F | Q | Y | A | C | A | S | C | H | V | G | G | I | T | K | . |
. |
. |
T | N | P | S | L | D | L | R | T | E | T | L | A | L | A | T | P | P | R | . |
. |
. |
. |
. |
. |
. |
. |
. |
. |
. |
. |
D | N | I | E | G | L | V | D | Y | M | K | N | P | T | T | Y | D |
| Template Known Secondary structure |   |
 |  |
|
|  |  |  |  |  |  |  |  |  |  |  |  |  |  | T |  |  |  |  | G | G | G |
|
| T | . | . | . | T |
| G | G | G |
|
|
|  |  |  |  |  | T | S | S | S |
|
| . | . | . | . | . | . | . | . | . | . | . | . | S | S |  |  |  |  |  |  |  |  |  | S |
| B |
| T | T |
| Template Predicted Secondary structure |   |
|
|
|
|  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
|
|
|
|
|
| . | . | . |
|
|
|
|
|
|
|
|
|  |  |  |  |  |  |
|
|
|
| . | . | . | . | . | . | . | . | . | . | . | . |
|
|  |  |  |  |  |  |  |  |  |
|
|
|
|
|
|
| Template SS confidence |   |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|   |   |
19 | 20 | . | . | . | . | . | . | . | . | . | 30 | . | . | . | . | . | . | . | . | . | 40 | . | . | . | . | . | . | . | |
|
|
. | . | 50 | . | . | . | . | . | . | . | . | . | 60 | . | . | . | . | . | . | |
|
|
|
|
|
|
|
|
|
|
|
. | . | . | 70 | . | . | . | . | . | . | . | . | . | 80 | . | . | . |
|   |
|   |   |
|
|
|
|
|
|
|
|
|
|
79 | 80 | . | . | . | . | . | . | . | . | . | 90 | . | . | . | . | . | . | . | . | . | 100 | . | . | . | . | . | . | . | . |
| Predicted Secondary structure |   |
. | . | . | . | . | . | . | . | . | . |  |
|
|
|
|
|
|
|
|
|
|
|
|
|
|  |  |  |  |  |  |  |  |  |  |  |  |  |  |
|
| Query SS confidence |   |
. |
. |
. |
. |
. |
. |
. |
. |
. |
. |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| Query Sequence |   |
. |
. |
. |
. |
. |
. |
. |
. |
. |
. |
K | Y | I | P | G | T | K | M | A | F | G | G | L | K | K | E | K | D | R | N | D | L | I | T | Y | L | K | K | A | C |
| Query Conservation |   |
. | . | . | . | . | . | . | . | . | . |   |   |   |
|
|
|   |
|
|   |   |   |   |
|   |   |   |
|
|   |
|
|
|
|
|
|   |
|   |   |
| Alig confidence |   |
. | . | . | . | . | . | . | . | . | . |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| Template Conservation |   |
  |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |
|
|   |   |   |   |
|
|
|
|
|
|   |
|
|
|
|
|
|
|   |
|   |
| Template Sequence |   |
G | E | Q | E | I | A | E | V | H | P | S | L | R | S | A | D | I | F | P | K | M | R | N | L | T | E | K | D | L | V | A | I | A | G | H | I | L | V | E | P |
| Template Known Secondary structure |   |
S | S | S | B |
| T | T | T | S |
|
| G | G | G | T | T | T | S | G | G | G | T | T |
|
|  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
| Template Predicted Secondary structure |   |
|  |  |  |  |  |  |  |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|  |  |  |  |  |  |  |  |  |  |  |  |  |
|
|
| Template SS confidence |   |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|   |   |
84 | . | . | . | . | . | 90 | . | . | . | . | . | . | . | . | . | 100 | . | . | . | . | . | . | . | . | . | 110 | . | . | . | . | . | . | . | . | . | 120 | . | . | . |
|   |
No model constructed - rank, confidence too low
Phyre is for academic use only
| Please cite: Protein structure prediction on
the web: a case study using the Phyre server |
| Kelley LA and Sternberg MJE. Nature Protocols
4, 363 - 371 (2009) [pdf] [Import into BibTeX] |
|   |
|
|
|