Job Description P00044 Confidence 97.99% Date Mon Jul 2 19:10:25 BST 2012 Rank 109 Aligned Residues 109 % Identity 12% Template c1zrtD_ PDB info PDB header:oxidoreductase/metal transport Chain: D: PDB Molecule:cytochrome c1; PDBTitle: rhodobacter capsulatus cytochrome bc1 complex with2 stigmatellin bound Resolution 3.50 Å

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		1	.	.	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.																													.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.
Predicted Secondary structure																														.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence																														.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence		M	T	E	F	K	A	G	S	A	K	K	G	A	T	L	F	K	T	R	C	L	Q	C	H	T	V	E	K	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	G	G	P	H	K	V	G	P	N	L	H	G	I	F	G	R	H	S	G	Q	A	E	G	Y
Query Conservation																														.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence																														.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation
Template Sequence		F	G	K	Y	D	Q	A	Q	L	R	R	G	F	Q	V	Y	N	E	V	C	S	A	C	H	G	M	K	F	V	P	I	R	T	L	A	D	D	G	G	P	Q	L	D	P	T	F	V	R	E	Y	A	A	G	L	D	T	I	I	D	K	D	S	G	E	E	R	D	R	K	E	T	D	M	F	P	T	R	V	G	D
Template Known Secondary structure		S																		T	T	T	T	T				T	T		B	G	G	G	S	S	S	S	S	S															S						S	S	S		S						T	T	S	B						S	S
Template Predicted Secondary structure
Template SS confidence
		15	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.
		53	.	.	.	.	.	.	60	.	.	.	.	.																				.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.												.	.	.	.	.
Predicted Secondary structure															.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																		.	.	.	.	.	.	.	.	.	.	.						.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence															.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																		.	.	.	.	.	.	.	.	.	.	.						.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence		S	Y	T	D	A	N	I	K	K	N	V	L	W	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	D	E	N	N	M	S	E	Y	L	T	N	P	K	K	Y	I	P	.	.	.	.	.	.	.	.	.	.	.	G	T	K	M	A	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Conservation															.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																		.	.	.	.	.	.	.	.	.	.	.						.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence															.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																		.	.	.	.	.	.	.	.	.	.	.						.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation
Template Sequence		G	M	G	P	D	L	S	V	M	A	K	A	R	A	G	F	S	G	P	A	G	S	G	M	N	Q	L	F	K	G	M	G	G	P	E	Y	I	Y	N	Y	V	I	G	F	E	E	N	P	E	C	A	P	E	G	I	D	G	Y	Y	Y	N	K	T	F	Q	I	G	P	D	T	C	K	G	V	K	I	T	H	G	S
Template Known Secondary structure		S						T	T	T	G	G	G							S			T	T	S									S									S							T	T		S	S			S	S					S	S			S				S			S	S	S		S	S
Template Predicted Secondary structure
Template SS confidence
		95	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.
					88	.	90	.	.	.															.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.
Predicted Secondary structure		.	.	.							.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence		.	.	.							.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence		.	.	.	F	G	G	L	K	K	.	.	.	.	.	.	.	.	.	.	.	.	.	.	E	K	D	R	N	D	L	I	T	Y	L	K	K	A	C	E
Query Conservation		.	.	.							.	.	.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence		.	.	.							.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation
Template Sequence		W	A	R	M	P	P	P	L	V	D	D	Q	V	T	Y	E	D	G	T	P	A	T	V	D	Q	M	A	Q	D	V	S	A	F	L	M	W	A	A	E
Template Known Secondary structure				S				S		S	S		S	S			T	T
Template Predicted Secondary structure
Template SS confidence
		180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions