Job Description P00044 Confidence 99.54% Date Mon Jul 2 19:10:25 BST 2012 Rank 32 Aligned Residues 89 % Identity 15% Template c1w5cT_ PDB info PDB header:photosynthesis Chain: T: PDB Molecule:cytochrome c-550; PDBTitle: photosystem ii from thermosynechococcus elongatus Resolution 3.2 Å

Show / Hide SS confidence

Show / Hide Conservation and Alignment quality

		4	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.
Predicted Secondary structure																																																																												.	.	.	.	.	.
Query SS confidence																																																																												.	.	.	.	.	.
Query Sequence		F	K	A	G	S	A	K	K	G	A	T	L	F	K	T	R	C	L	Q	C	H	T	V	E	K	G	G	P	H	K	V	G	P	N	L	H	G	I	F	G	R	H	S	G	Q	A	E	G	Y	S	Y	T	D	A	N	I	K	K	N	V	L	W	D	E	N	N	M	S	E	Y	L	T	N	P	.	.	.	.	.	.
Query Conservation																																																																												.	.	.	.	.	.
Alig confidence																																.							.	.	.	.	.	.	.	.	.	.	.	.	.	.																								.	.	.	.	.	.
Template Conservation																																.							.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence		L	T	E	K	Q	Y	L	E	G	K	R	L	F	Q	Y	A	C	A	S	C	H	V	G	G	I	T	K	T	N	P	.	S	L	D	L	R	T	.	.	.	.	.	.	.	.	.	.	.	.	.	.	E	T	L	A	L	A	T	P	P	R	D	N	I	E	G	L	V	D	Y	M	K	N	P	T	T	Y	D	G	E
Template Known Secondary structure																		T					G	G	G			S	S	S	T	.	T	S					.	.	.	.	.	.	.	.	.	.	.	.	.	.					T	S	S	S			S	S										S		B		T	T	S	S
Template Predicted Secondary structure																																.							.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
		21	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50		.	.	.	.	.	.															.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.
									78	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.
Predicted Secondary structure		.	.	.	.	.	.	.
Query SS confidence		.	.	.	.	.	.	.
Query Sequence		.	.	.	.	.	.	.	K	K	Y	I	P	G	T	K	M	A	F	G	G	L	K	K	E	K	D	R	N	D	L	I	T	Y	L	K	K	A
Query Conservation		.	.	.	.	.	.	.
Alig confidence		.	.	.	.	.	.	.
Template Conservation
Template Sequence		Q	E	I	A	E	V	H	P	S	L	R	S	A	D	I	F	P	K	M	R	N	L	T	E	K	D	L	V	A	I	A	G	H	I	L	V	E
Template Known Secondary structure		S	B		T	T	T	S			S	T	T	T	T	T	S	G	G	G	T	T
Template Predicted Secondary structure
Template SS confidence
		86	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.

No model constructed - rank, confidence too low

---

Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions