Phyre 2 alignment of P15891 with c3njqB_

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Job Description | P15891
Confidence | 32.43% | Date | Mon Jul 2 19:13:22 BST 2012
Rank | 287 | Aligned Residues | 41
% Identity | 27% | Template | c3njqB_
PDB info | PDB header:viral protein/inhibitor | Chain: B: PDB Molecule:orf 17; | PDBTitle: crystal structure of kaposi's sarcoma-associated herpesvirus protease2 in complex with dimer disruptor
Resolution | 2.00 Å

| Insertion relative to template
| Deletion relative to template
| Catalytic residue from the CSA
Detailed help on interpreting your alignment

|  | 539 | 540 | . | . | . | . | . | . | . | . | . | 550 | . | . | . | . | . | . |  |  |  |  |  |  |  |  |  |  | . | . | . | 560 | . | . | . | . | . | . | . |  |  |  | . | . | 570 | . | . | . | . | . | . | . | . | . | 580 | . | . | .
Predicted Secondary structure |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  | . | . | . | . | . | . | . | . | . | . |  |  |  |  |  |  |  |  |  |  |  | . | . | . |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
Query SS confidence |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  | . | . | . | . | . | . | . | . | . | . |  |  |  |  |  |  |  |  |  |  |  | . | . | . |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
Query Sequence |  | A | E | Y | D | Y | D | A | A | E | D | N | E | L | T | F | V | E | N | . | . | . | . | . | . | . | . | . | . | D | K | I | I | N | I | E | F | V | D | D | . | . | . | D | W | W | L | G | E | L | E | K | D | G | S | K | G | L | F
Query Conservation |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  | . | . | . | . | . | . | . | . | . | . |  |  |  |  |  |  |  |  |  |  |  | . | . | . |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
Alig confidence |  |  |  |  |  | . | . |  |  |  |  |  |  |  |  |  |  |  |  | . | . | . | . | . | . | . | . | . | . |  |  |  |  |  |  |  |  |  |  |  | . | . | . |  |  |  |  |  |  |  | . | . |  |  |  |  |  |  |
Template Conservation |  |  |  |  |  | . | . |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  | . | . |  |  |  |  |  |  |
Template Sequence |  | D | V | V | S | . | . | P | K | L | E | Q | E | L | Y | L | D | P | D | Q | V | T | D | Y | L | P | V | T | E | P | L | P | I | T | I | E | H | L | P | E | T | E | V | G | W | T | L | G | L | F | . | . | Q | V | S | H | G | I | F
Template Known Secondary structure |  |  |  |  |  | . | . |  |  | S | S | S |  |  |  |  |  | G | G | G | T | G | G | G |  |  | B |  | S |  |  |  |  |  |  | T | T | B | T | T | B |  |  |  |  |  |  |  |  |  | . | . |  |  | T | T |  |  |
Template Predicted Secondary structure |  |  |  |  |  | . | . |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  | . | . |  |  |  |  |  |  |
Template SS confidence |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
|  | 12 | . | . | . |  |  | . | . | . | . | 20 | . | . | . | . | . | . | . | . | . | 30 | . | . | . | . | . | . | . | . | . | 40 | . | . | . | . | . | . | . | . | . | 50 | . | . | . | . | . | . | . | . |  |  | . | 60 | . | . | . | . | .

Download: | Text version

No model constructed - rank, confidence too low

Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
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Lawrence Kelley, Benjamin Jefferys |
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