05/07/2012 21:05:37 : INFO  : Run start: Thu Jul  5 21:05:37 BST 2012
05/07/2012 21:05:37 : INFO  : Initialised job
05/07/2012 21:05:37 : INFO  : Initialised job:
Sequence
>batch____
MALEPIDYTTHSREIDAEYLKIVRGSDPDTTWLIISPNAKKEYEPESTGSSFHDFLQLFD
ETKVQYGLARVSPPGSDVEKIIIIGWCPDSAPLKTRASFAANFAAVANNLFKGYHVQVTA
RDEDDLDENELLMKISNAAGARYSIQTSSKQQGKASTPPVKKSFTPSKSPAPVSKKEPVK
TPSPAPAAKISSRVNDNNDDDDWNEPELKERDFDQAPLKPNQSSYKPIGKIDLQKVIAEE
KAKEDPRLVQKPTAAGSKIDPSSDIANLKNESKLKRDSEFNSFLGTTKPPSMTESSLKND
DDKVIKGFRNEKSPAQLWAERKAKQNSGNAETKAEAPKPEVPEDEPEGEPDVKDLKSKFE
GLAASEKEEEEMENKFAPPPKKSEPTIISPKPFSKPQEPVKAEEAEQPKTDYKKIGNPLP
GMHIEADNEEEPEENDDDWDDDEDEAAQPPLPSRNVASGAPVQKEEPEQEEIAPSLPSRN
SIPAPKQEEAPEQAPEEEIEEEAEEAAPQLPSRSSAAPPPPPRRATPEKKPKENPWATAE
YDYDAAEDNELTFVENDKIINIEFVDDDWWLGELEKDGSKGLFPSNYVSLGN

05/07/2012 21:05:37 : INFO  : Checked sequence
05/07/2012 21:05:37 : INFO  : Finding homologues with PSI-BLAST
05/07/2012 21:05:37 : INFO  : PSI-BLAST 3 iterations
05/07/2012 21:09:36 : INFO  : PSI-BLAST 5 iterations
05/07/2012 21:13:20 : INFO  : Finished PSI-BLAST
05/07/2012 21:13:20 : INFO  : Running Buildali to generate a3m file
05/07/2012 21:50:54 : INFO  : Converting to HMM
05/07/2012 21:51:12 : INFO  : Calibrating HMM
05/07/2012 21:51:24 : INFO  : Searching HMM database
05/07/2012 22:00:11 : INFO  : Finished buildali
05/07/2012 22:00:11 : INFO  : Predicting secondary structure
05/07/2012 22:00:12 : INFO  : Predicted secondary structure (PSI-Pred)
05/07/2012 22:00:12 : INFO  : Predicting Disordered regions
05/07/2012 22:00:12 : INFO  : Predicted Disorder (Disopred)
05/07/2012 22:00:12 : INFO  : Running memsat_svm check
05/07/2012 22:05:19 : INFO  : Running memsat_svm full
05/07/2012 22:05:45 : INFO  : Predicted Transmembrane (memsat_svm) ID 'a839774b4009a372'
05/07/2012 22:05:45 : INFO  : Initialising fold library search
05/07/2012 22:05:45 : INFO  : Initialised search input
05/07/2012 22:05:45 : INFO  : Building Ensemble models
05/07/2012 22:05:45 : INFO  : Building hh.d1hqz1_.model.1.pdb
05/07/2012 22:05:45 : INFO  : Building hh.c1mv3A_.model.2.pdb
05/07/2012 22:05:46 : INFO  : cpying /bmm/www/servers/phyre2/public_html/phyre2_output/a839774b4009a372/hh.c1mv3A_.model.2.pdb to /bmm/www/servers/phyre2/public_html/phyre2_output/a839774b4009a372/c1mv3A_.6.pdb
05/07/2012 22:05:46 : INFO  : Building hh.c1griA_.model.3.pdb
05/07/2012 22:05:46 : INFO  : cpying /bmm/www/servers/phyre2/public_html/phyre2_output/a839774b4009a372/hh.c1griA_.model.3.pdb to /bmm/www/servers/phyre2/public_html/phyre2_output/a839774b4009a372/c1griA_.8.pdb
05/07/2012 22:05:46 : INFO  : Building hh.c2kymA_.model.4.pdb
05/07/2012 22:05:46 : INFO  : cpying /bmm/www/servers/phyre2/public_html/phyre2_output/a839774b4009a372/hh.c2kymA_.model.4.pdb to /bmm/www/servers/phyre2/public_html/phyre2_output/a839774b4009a372/c2kymA_.12.pdb
05/07/2012 22:05:46 : INFO  : Building hh.d1ng2a2.model.5.pdb
05/07/2012 22:05:47 : INFO  : cpying /bmm/www/servers/phyre2/public_html/phyre2_output/a839774b4009a372/hh.d1ng2a2.model.5.pdb to /bmm/www/servers/phyre2/public_html/phyre2_output/a839774b4009a372/d1ng2a2.14.pdb
05/07/2012 22:05:47 : INFO  : Building hh.c2oi3A_.model.6.pdb
05/07/2012 22:05:47 : INFO  : cpying /bmm/www/servers/phyre2/public_html/phyre2_output/a839774b4009a372/hh.c2oi3A_.model.6.pdb to /bmm/www/servers/phyre2/public_html/phyre2_output/a839774b4009a372/c2oi3A_.15.pdb
05/07/2012 22:05:47 : INFO  : Building hh.c2yupA_.model.7.pdb
05/07/2012 22:05:47 : INFO  : cpying /bmm/www/servers/phyre2/public_html/phyre2_output/a839774b4009a372/hh.c2yupA_.model.7.pdb to /bmm/www/servers/phyre2/public_html/phyre2_output/a839774b4009a372/c2yupA_.16.pdb
05/07/2012 22:05:47 : INFO  : Building d1hqz1_.1.pdb
05/07/2012 22:05:48 : INFO  : Building d1udma_.2.pdb
05/07/2012 22:05:48 : INFO  : Building d1wnja_.3.pdb
05/07/2012 22:05:48 : INFO  : Building c1x67A_.4.pdb
05/07/2012 22:05:49 : INFO  : Building d1t3ya1.5.pdb
05/07/2012 22:05:49 : INFO  : Building c1mv3A_.6.pdb
05/07/2012 22:05:49 : INFO  : Building d1cfya_.7.pdb
05/07/2012 22:05:49 : INFO  : Building c1griA_.8.pdb
05/07/2012 22:05:50 : INFO  : Building d1cnua_.9.pdb
05/07/2012 22:05:50 : INFO  : Building c2kd5A_.10.pdb
05/07/2012 22:05:50 : INFO  : Building c2rqrA_.11.pdb
05/07/2012 22:05:50 : INFO  : Building c2kymA_.12.pdb
05/07/2012 22:05:51 : INFO  : Building c2lqnA_.13.pdb
05/07/2012 22:05:51 : INFO  : Building d1ng2a2.14.pdb
05/07/2012 22:05:51 : INFO  : Building c2oi3A_.15.pdb
05/07/2012 22:05:52 : INFO  : Building c2yupA_.16.pdb
05/07/2012 22:05:52 : INFO  : Building c3nmzD_.17.pdb
05/07/2012 22:05:52 : INFO  : Building c2dx1A_.18.pdb
05/07/2012 22:05:53 : INFO  : Building c2l3sA_.19.pdb
05/07/2012 22:05:53 : INFO  : Building d1jo8a_.20.pdb
05/07/2012 22:05:56 : INFO  : Finished HH model building
05/07/2012 22:05:56 : WARN  : Set python to /bmm/www/servers/phyre2/bin//newpython/python2.6
05/07/2012 22:06:00 : INFO  : html domain output complete ID 'a839774b4009a372'
05/07/2012 22:19:28 : INFO  : Run end  : Thu Jul  5 22:19:28 BST 2012
