Job Description O13329 Confidence 99.97% Date Mon Jul 2 19:10:05 BST 2012 Rank 5 Aligned Residues 153 % Identity 17% Template c3l2tB_ PDB info PDB header:recombination/dna Chain: B: PDB Molecule:integrase; PDBTitle: crystal structure of the prototype foamy virus (pfv) intasome in2 complex with magnesium and mk0518 (raltegravir) Resolution 2.85 Å

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		215	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		D	K	L	L	P	M	E	R	I	H	I	E	V	F	E	P	F	N	G	E	A	I	E	G	K	Y	S	Y	V	L	L	C	R	D	Y	R	S	S	F	M	W	L	L	P	L	K	S	T	K	F	K	H	L	I	P	V	V	S	S	L	F	L	T	F	A	R	V	P	I	F	V	T	S	S	T	L	D	K	D	D
Query Conservation
Alig confidence																							.	.	.																																		.											.	.	.	.	.	.
Template Conservation																							.	.	.																																		.											.	.	.	.	.	.
Template Sequence		R	P	Q	K	P	F	D	K	F	F	I	D	Y	I	G	P	L	P	P	S	Q	.	.	.	G	Y	L	Y	V	L	V	V	V	D	G	M	T	G	F	T	W	L	Y	P	T	K	A	P	S	T	S	A	T	V	K	S	L	.	N	V	L	T	S	I	A	I	P	K	.	.	.	.	.	.	V	I	H	S	D	Q
Template Known Secondary structure						T	T	S											S		B	T	.	.	.	T	B									T	T	T									S	S	S	S									.				T	T	T				S	.	.	.	.	.	.
Template Predicted Secondary structure																							.	.	.																																		.											.	.	.	.	.	.
Template SS confidence
		117	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.				.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170		.	.	.	.	.	.	.	.	.	180							.	.	.	.	.	.
		295	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.			.	.	.	.	320	.	.	.	.		.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340					.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.
Predicted Secondary structure																							.	.										.																	.	.	.	.
Query SS confidence																							.	.										.																	.	.	.	.
Query Sequence		L	Y	D	I	C	E	E	I	A	S	K	Y	G	L	R	I	G	L	G	L	K	.	.	S	S	A	R	F	H	T	G	G	.	I	L	C	I	Q	Y	A	L	N	S	Y	K	K	E	C	L	.	.	.	.	A	D	W	G	K	C	L	R	Y	G	P	Y	R	F	N	R	R	R	N	K	R	T	K	R	K	P	V
Query Conservation																							.	.										.																	.	.	.	.
Alig confidence																							.	.										.																	.	.	.	.
Template Conservation
Template Sequence		G	A	A	F	T	S	S	T	F	A	E	W	A	K	E	R	G	I	H	L	E	F	S	T	P	Y	H	P	Q	S	S	G	K	V	E	R	K	N	S	D	I	K	R	L	L	T	K	L	L	V	G	R	P	T	K	W	Y	D	L	L	P	V	V	Q	L	A	L	N	N	T	Y	S	P	V	L	K	Y	T	P	H
Template Known Secondary structure							S										T	T								T	T																								T	T	S	T	T		G	G	G	G										T	S			T	T	T	T
Template Predicted Secondary structure
Template SS confidence
		187	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.
		368	.	370	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		Q	V	L	L	S	E	V	P	G	H
Query Conservation
Alig confidence
Template Conservation
Template Sequence		Q	L	L	F	G	I	D	S	N	T
Template Known Secondary structure						S	S			S	S
Template Predicted Secondary structure
Template SS confidence
		267	.	.	270	.	.	.	.	.	.

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
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