Job Description O13329 Confidence 99.92% Date Mon Jul 2 19:10:05 BST 2012 Rank 10 Aligned Residues 128 % Identity 9% Template c3kksB_ PDB info PDB header:dna binding protein Chain: B: PDB Molecule:integrase; PDBTitle: crystal structure of catalytic core domain of biv integrase in crystal2 form ii Resolution 2.20 Å

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		238	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.			.
Predicted Secondary structure																																																																															.	.
Query SS confidence																																																																															.	.
Query Sequence		G	K	Y	S	Y	V	L	L	C	R	D	Y	R	S	S	F	M	W	L	L	P	L	K	S	T	K	F	K	H	L	I	P	V	V	S	S	L	F	L	T	F	A	R	V	P	I	F	V	T	S	S	T	L	D	K	D	D	L	Y	D	I	C	E	E	I	A	S	K	Y	G	L	R	I	G	L	G	L	.	.	K
Query Conservation																																																																															.	.
Alig confidence																																														.	.	.	.	.	.	.																											.	.
Template Conservation																																														.	.	.	.	.	.	.
Template Sequence		W	N	K	T	I	I	W	V	A	V	E	T	N	S	G	L	V	E	A	Q	V	I	P	E	E	T	A	L	Q	V	A	L	C	I	L	Q	L	I	Q	R	Y	T	V	L	.	.	.	.	.	.	.	H	L	H	S	D	N	G	P	C	F	T	A	H	R	I	E	N	L	C	K	Y	L	G	I	T	K	T	T	G
Template Known Secondary structure			T	T									T	T	T	T								S	S	S																S			S	.	.	.	.	.	.	.						S						S										T	T						S
Template Predicted Secondary structure																																														.	.	.	.	.	.	.
Template SS confidence
		68	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.								.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140
		316	.	.	.	320	.	.	.	.		.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340				.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.
Predicted Secondary structure											.																	.	.	.
Query SS confidence											.																	.	.	.
Query Sequence		S	S	A	R	F	H	T	G	G	.	I	L	C	I	Q	Y	A	L	N	S	Y	K	K	E	C	L	.	.	.	A	D	W	G	K	C	L	R	Y	G	P	Y	R	F	N	R	R	R	N	K	R	T	K	R	K	P	V	Q	V	L	L	S
Query Conservation											.																	.	.	.
Alig confidence											.																	.	.	.
Template Conservation
Template Sequence		I	P	Y	N	P	Q	S	Q	G	V	V	E	R	A	H	R	D	L	K	D	R	L	A	A	Y	Q	G	D	C	E	T	V	E	A	A	L	S	L	A	L	V	S	L	N	K	K	R	G	G	I	G	G	H	T	P	Y	E	I	Y	L	E
Template Known Secondary structure		S		S																							G	G	G		S	S															S				G	G	G
Template Predicted Secondary structure
Template SS confidence
		141	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
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