Job Description O13329 Confidence 99.97% Date Mon Jul 2 19:10:05 BST 2012 Rank 3 Aligned Residues 182 % Identity 16% Template c3hpgC_ PDB info PDB header:transferase Chain: C: PDB Molecule:integrase; PDBTitle: visna virus integrase (residues 1-219) in complex with ledgf2 ibd: examples of open integrase dimer-dimer interfaces Resolution 3.28 Å

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		152	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.
Predicted Secondary structure
Query SS confidence
Query Sequence		Y	D	M	V	M	A	T	H	L	M	N	K	H	L	R	G	K	T	L	H	S	F	L	F	S	H	F	A	N	I	S	H	A	I	I	D	W	V	Q	Q	F	C	S	K	C	N	K	K	G	K	I	K	P	L	K	E	Y	K	R	P	D	M	Y	D	K	L	L	P	M	E	R	I	H	I	E	V	F	E	P	F
Query Conservation
Alig confidence												.													.	.	.	.	.																						.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.													.
Template Conservation												.													.	.	.	.	.																						.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.													.
Template Sequence		I	P	L	A	E	E	E	H	N	K	.	W	H	Q	D	A	V	S	L	H	L	E	F	.	.	.	.	.	G	I	P	R	T	A	A	E	D	I	V	Q	Q	C	D	V	C	Q	E	N	K	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	M	I	D	H	W	Q	V	D	Y	T	H	Y	.
Template Known Secondary structure												.													.	.	.	.	.													T						T			.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.													.
Template Predicted Secondary structure												.													.	.	.	.	.																						.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.													.
Template SS confidence
		5	.	.	.	.	10	.	.	.	.		.	.	.	.	.	20	.	.	.	.	.	.						.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.																			.	.	50	.	.	.	.	.	.	.	.	.
		232	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.
Predicted Secondary structure
Query SS confidence
Query Sequence		N	G	E	A	I	E	G	K	Y	S	Y	V	L	L	C	R	D	Y	R	S	S	F	M	W	L	L	P	L	K	S	T	K	F	K	H	L	I	P	V	V	S	S	L	F	L	T	F	A	R	V	P	I	F	V	T	S	S	T	L	D	K	D	D	L	Y	D	I	C	E	E	I	A	S	K	Y	G	L	R	I	G
Query Conservation
Alig confidence		.	.	.	.	.	.	.																																										.			.	.	.	.	.	.
Template Conservation		.	.	.	.	.	.	.																																										.			.	.	.	.	.	.
Template Sequence		.	.	.	.	.	.	.	E	D	K	I	I	L	V	W	V	E	T	N	S	G	L	I	Y	A	E	R	V	K	G	E	T	G	Q	E	F	R	V	Q	T	M	K	W	Y	A	M	F	A	.	P	K	.	.	.	.	.	.	S	L	Q	S	D	N	G	P	A	F	V	A	E	S	T	Q	L	L	M	K	Y	L	G
Template Known Secondary structure		.	.	.	.	.	.	.	S	S									T	T	T									S																		S		.		S	.	.	.	.	.	.						S																	T
Template Predicted Secondary structure		.	.	.	.	.	.	.																																										.			.	.	.	.	.	.
Template SS confidence
									71	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.		.	.							.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.
		312	.	.			.	.	.	.	.	320	.	.	.	.		.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340				.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.
Predicted Secondary structure					.	.											.																	.	.	.
Query SS confidence					.	.											.																	.	.	.
Query Sequence		L	G	L	.	.	K	S	S	A	R	F	H	T	G	G	.	I	L	C	I	Q	Y	A	L	N	S	Y	K	K	E	C	L	.	.	.	A	D	W	G	K	C	L	R	Y	G	P	Y	R	F	N	R	R	R	N	K	R	T	K	R	K	P	V	Q	V	L	L	S
Query Conservation					.	.											.																	.	.	.
Alig confidence					.	.											.																	.	.	.
Template Conservation
Template Sequence		I	E	H	T	T	G	I	P	W	N	P	Q	S	Q	A	L	V	E	R	T	H	Q	T	L	K	N	T	L	E	K	L	I	P	M	F	N	A	F	E	S	A	L	A	G	T	L	I	T	L	N	I	K	R	K	G	G	L	G	T	S	P	M	D	I	F	I	F
Template Known Secondary structure							S	S				T	T																				G	G	G		S	S														T	T			B	T	T	T	B
Template Predicted Secondary structure
Template SS confidence
		137	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.

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Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
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